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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:49:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

0118872 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV113560.1:345-370
TGCCTTCTTAAGATAAGGTTTCAAGTTAAA345GTTCGGTTCTCTGGCTTGTTCCAATGTATCTTTGATCATAGCTTCCTGCAAGGGGT
BOGTG32TR BOGT Brassica oleracea genomic clone BOGTG32, genomic survey sequence.
BH543638.1:326-351
TGCCTTCTTAAGATAAGGTTTCAAGTTAAA326GTTCGGTTCTCTGGCTTGTTCCAATGTATCTTTGATCATAGCTTCCTGTTAAAACC
BOHTM83TR BO_2_3_KB Brassica oleracea genomic clone BOHTM83, genomic survey sequence.
BH715799.1:73-98
TGCCTTCTTAAGATAAGGTTTCAAGTTAAA73GTTCGGTTCTCTGGCTTGTTCCAATGTATCTTTGATCATAGCTTCCTGTTAAAACC
BONHA56TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONHA56, genomic survey sequence.
BZ443456.1:180-205
TGCCTTCTTAAGATAAGGTTTCAAGTTAAA180GTTCGGTTCTCTGGCTTGTTCCAATGTATCTTTGATCATAGCTTCCTGTTAAAACC
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:53302978-53303003
TGCCTTCTTAAGATAAGGTTTCAAGTTAAA53302978GTTCGGTTCTCTGGCTTGTTCCAATGTATCTTTGATCATAGCTTCCTGTTAAAACC
RT1088 Chinese cabbage root library Brassica rapa subsp. pekinensis cDNA clone RT1088 5', mRNA sequence.
CV432725.1:270-295
ACCCCTTGCAGGAAGCTATGATCAAAGATA270CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTAAAGAAAGCA
Brassica oleracea var. viridis mRNA, clone: KALE-150L13, 3' end sequence.
DK572751.1:354-379
ACCCCTTGCAGGAAGCTATGATCAAAGATA354CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTTAAGAAGGCA
0118958 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV113646.1:262-287
ACCCCTTGCAGGAAGCTATGATCAAAGATA262CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTTAAGAAGGCA
BR114799 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-08C05 5', mRNA sequence.
EX130969.1:740-765
ACCCCTTGCAGGAAGCTATGATCAAAGATA740CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTTAAGAAGGCA
BR119741 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-64C06 5', mRNA sequence.
EX135911.1:740-765
ACCCCTTGCAGGAAGCTATGATCAAAGATA740CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTTAAGAAGGCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7721.
FX693141.1:2343-2368
ACCCCTTGCAGGAAGCTATGATCAAAGATA2343CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTTAAGAAGGCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_49200.
FX726840.1:2272-2297
ACCCCTTGCAGGAAGCTATGATCAAAGATA2272CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTAAAGAAGGCA
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:6321404-6321429
GGTTTTAACAGGAAGCTATGATCAAAGATA6321404CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTTAAGAAGGCA
Brassica napus genome assembly, chromosome: A06.
HG994360.1:5271120-5271145
GGTTTTAACAGGAAGCTATGATCAAAGATA5271120CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTTAAGAAGGCA
Brassica napus genome assembly, chromosome: C05.
HG994369.1:6012468-6012493
GGTTTTAACAGGAAGCTATGATCAAAGATA6012468CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTTAAGAAGGCA
Brassica rapa genome, scaffold: A06.
LR031569.1:5206311-5206336
GGCTTTAACAGGAAGCTATGATCAAAGATA5206311CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTTAAGAAGGCA
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:5882410-5882435
GGTTTTAACAGGAAGCTATGATCAAAGATA5882410CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTTAAGAAGGCA
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:5309713-5309738
GGCTTTAACAGGAAGCTATGATCAAAGATA5309713CATTGGAACAAGCCAGAGAACCGAACTTTAACTTGAAACCTTATCTTAAGAAGGCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTCGGTTCTCTGGCTTGTTCCAATG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTCGGTTCTCTGGCTTGTTCCAATG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.224 | 0.215 | search_plus_done; http://172.18.8.135:50400/match?q=GTTCGGTTCTCTGGCTTGTTCCAATG&k=0&no_gap=0&offset=0&limit=50
0.559 | 0.336 | search_minus_done; http://172.18.8.135:50400/match?q=CATTGGAACAAGCCAGAGAACCGAAC&k=0&no_gap=0&offset=0&limit=45
0.568 | 0.009 | cgi_end;

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