GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_17575.
FX709827.1:322-341

CTTTGTCCATGCATTCTTTCATCTTCAGCA322GTTCGTTCAGGCACCATTTTGACTCGGTGTACCTCACAGAAAAGAGAGCC

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_70400.
FX775935.1:209-228

CTTTGTCCATGCATTCTTTCATCTTCAGCA209GTTCGTTCAGGCACCATTTTGACTCGGTGTACCTCACAGAAAAGAGAGCC

BOHKR18TR BOHK Brassica oleracea genomic clone BOHKR18, genomic survey sequence.
BH539980.1:602-621

CTTTGTCCATGCATTCTTTCATCTTCACAA602GTTCGTTCAGGCACCATTTTGACTCGGTGTACC

Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:15112031-15112050

CTTTGTCCATGCATTCTTTCATCTTCACAA15112031GTTCGTTCAGGCACCATTTTGACTCGGTGTACCTCACAGAAAAGAGAGCC

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:764358-764377

TCTCTTCCATGCATTCAAGAATCTTTACGA764358GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:807529-807548

TCTCTTCCATGCATTCAAGAATCTTTACGA807529GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:848519-848538

TCTCTTCCATGCATTCAAGAATCTTTACGA848519GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:915652-915671

TCACTTCCATGCATTCAAGAATCTTTACGA915652GTTCGTTCAGGCACCATTTTGAAGAAGTGTACTTTGGAGAGATGACAATG

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:942600-942619

TCTTTTCCATGCATTCAAGAATCTTTACGA942600GTTCGTTCAGGCACCATTTTGAAGAACCGTAGTTTGGAGAGATGACAATG

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:987079-987098

TCACTTCCATGCATTCAAGAATCTTTACGA987079GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:1024499-1024518

TCTTTTCCATGCATTCAAGAATCTTTACGA1024499GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATTTGGAGAGATGACAACG

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:787505-787524

TCTTTTCCATCCATTCAAGAATCTTTACGA787505GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG

Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:805007-805026

TCTCTTCCATGCATTCAAGAATCTTTACGA805007GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG

Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:879936-879955

TCTCTTCCATGCATTCAAGAATCTTTACGA879936GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACCATG

Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:979832-979851

TCTCTTCCATGCATTCAAGAATCTTTACGA979832GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG

Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1427855-1427874

TCACTTCCATGCATTCAAGAATCTTTATGA1427855GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG

Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1473199-1473218

TCTCTTGCATGCATTTAAGAATCGTTACGA1473199GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG

Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1487083-1487102

ATGATCTCATGCGTTCAAGAATCTTTACGA1487083GTTCGTTCAGGCACCATTTTGAAGAACCGTAGTTTGGAGAGATGACAATG

Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1514872-1514891

TCACTTCTATGCATTCAAGAATCTTTACGA1514872GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG

Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1538915-1538934

TCTCTTCCATGCATTCAAGAATCTTTACGA1538915GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG

Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1601124-1601143

TCTCTTCCATGCATTCAAGAATCTTTACGA1601124GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG

Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1638331-1638350

TCTTTTCCATGCATTCAAGAATCTTTACGA1638331GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG

Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:774109-774128

TCTTTTCCATGCATTCAAGAATCTTTACGA774109GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG

Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:796134-796153

TCTCTTCCATGCATTCAAGAATCTTTACGA796134GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG

Malus domestica genome assembly, chromosome: 10.
OU696686.1:1019573-1019592

TCTTTTCCATGCATTCAAGAATCTTTACGA1019573GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG

Malus domestica genome assembly, chromosome: 10.
OU696686.1:1034361-1034380

TCTCTTCCATGCATTCAAGAATCTTTACGA1034361GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG

Malus domestica genome assembly, chromosome: 10.
OU744551.1:1080920-1080939

TCTCTTCCATGCATTCAAGAATCTTTACGA1080920GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACCATG

Malus domestica genome assembly, chromosome: 10.
OU744551.1:1180811-1180830

TCTCTTCCATGCATTCAAGAATCTTTACGA1180811GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG

Malus domestica genome assembly, chromosome: 10.
OU744962.1:811537-811556

TCTTTTCCATGCATTCAAGAATCTTTACGA811537GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG

Malus domestica genome assembly, chromosome: 10.
OU744962.1:826325-826344

TCTCTTCCATGCATTCAAGAATCTTTACGA826325GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG

Malus domestica genome assembly, chromosome: 10.
OU745000.1:623566-623585

TCTTTTCCATGCATTCAAGAATCTTTACGA623566GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG

Malus domestica genome assembly, chromosome: 10.
OU745000.1:641068-641087

TCTCTTCCATGCATTCAAGAATCTTTACGA641068GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG

Malus x robusta genome assembly, chromosome: 4.
OY720328.1:766923-766942

TCTTTTCCATGCATTCAAGAATCTTTACGA766923GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG

Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:1138244-1138263

TCTTTTCCATGCATTCAAGAATCTTTACGA1138244GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATTTGGAGAGATGACAACG

Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:1181521-1181540

TCTTTTCCATGCATTCAAGAATCTTTACGA1181521GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATTTGGAGAGATGACAACG

Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:5283632-5283651

TCTCTTCCATGCATCCAAGAATCATTACAA5283632GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG

Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:5524222-5524241

TCTCTTCCATGCATCCAAGAATCGTTACAA5524222GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG

Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:5673133-5673152

TCTCTTCCATGCATCCAAGAATCGTTACAA5673133GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG

Mobula hypostoma genome assembly, chromosome: 16.
OY992608.1:51603294-51603313

ATAATGAAAATATGTAAGAGAAGTCTTGTT51603294AAAATGGTGCCTGAACGAACCACAATTAATATAGTGCATAAATATATTTT

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:57536563-57536582

GGCTCTCTTTTCTGTGAGGTACACCGAGTC57536563AAAATGGTGCCTGAACGAACTGCTGAAGATGAAAGAATGCATGGACAAAG

Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:7645087-7645106

CATTGTCATCTCTCCAAAGTACGCTTCTTC7645087AAAATGGTGCCTGAACGAACTCGTAAAGATTCTTGAATGCATGGAAGAGA

Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:7662589-7662608

CATTGTCATCTCTCCAAACTACGCTTCTTC7662589AAAATGGTGCCTGAACGAACTCGTAAAGATTCTTGAATGCATGGAAAAGA

Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:1144522-1144541

CGTTGTCATCTCTCCAGATTACGCTTCTTC1144522AAAATGGTGCCTGAACGAACTCGTAAAGATTCTTGAATGCATGGAAGAGA

Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:1244419-1244438

CATGGTCATCTCTCCAAACTACGCTTCTTC1244419AAAATGGTGCCTGAACGAACTCGTAAAGATTCTTGAATGCATGGAAGAGA

Brassica rapa subsp. pekinensis isolate BrTNL46 disease resistance protein gene, complete cds.
FJ842799.1:255-274

GGCTCTCTTTTCTGTGAGGTACACCGAGTC255AAAATGGTGCCTGAACGAACTGCTGAAGATGAAAGAATGCATGGACAAAG

Brassica napus genome assembly, chromosome: A09.
HG994363.1:41420119-41420138

GGCTCTCTTTTCTGTGAGGTACACCGAGTC41420119AAAATGGTGCCTGAACGAACTGCTGAAGATGAAAGAATGCATGGACAAAG

Brassica napus genome assembly, chromosome: C08.
HG994372.1:26694241-26694260

GGCTCTCTTTTCTGTGAGGTACACCGAGTC26694241AAAATGGTGCCTGAACGAACTTGTGAAGATGAAAGAATGCATGGACAAAG

Brassica rapa genome, scaffold: A09.
LR031568.1:45735606-45735625

GGCTCTCTTTTCTGTGAGGTACACCGAGTC45735606AAAATGGTGCCTGAACGAACTGCTGAAGATGAAAGAATGCATGGACAAAG

Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:35830316-35830335

GGCTCTCTTTTCTGTGAGGTACACCGAGTC35830316AAAATGGTGCCTGAACGAACTTGTGAAGATGAAAGAATGCATGGACAAAG

Brassica rapa genome assembly, chromosome: A09.
LS974625.2:56196328-56196347

GGCTCTCTTTTCTGTGAGGTACACCGAGTC56196328AAAATGGTGCCTGAACGAACTGCTGAAGATGAAAGAATGCATGGACAAAG

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Debug Info:

0.008 | 0.008 | search_start;
0.153 | 0.145 | search_plus_done; http://172.18.8.135:50400/match?q=GTTCGTTCAGGCACCATTTT&k=0&no_gap=0&offset=0&limit=50
0.240 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=AAAATGGTGCCTGAACGAAC&k=0&no_gap=0&offset=0&limit=11
0.247 | 0.008 | cgi_end;

Summary:

Results:

Data Export:

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