GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 17:44:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 5078 from Patent WO2009037279.
GN100297.1:124-146
ACAGTTAGAGATTTAGGTAAGAAGCAGAAA124GTTGAACATTTATGGAAGTTGGAAGGAGCAACAGAAAGACTCAAACTAGTCCA
Sequence 5078 from patent US 8664475.
HK289277.1:124-146
ACAGTTAGAGATTTAGGTAAGAAGCAGAAA124GTTGAACATTTATGGAAGTTGGAAGGAGCAACAGAAAGACTCAAACTAGTCCA
Sequence 72230 from patent US 8952217.
HK456335.1:124-146
ACAGTTAGAGATTTAGGTAAGAAGCAGAAA124GTTGAACATTTATGGAAGTTGGAAGGAGCAACAGAAAGACTCAAACTAGTCCA
Medicago truncatula clone mth2-31d24, complete sequence.
AC138130.9:111769-111791
TAACATATACTTGCAGGTAAGAAGCAGAAA111769GTTGAACATTTATGGAAGTTGGAAGGAGCAACAGAAAGACTCAAACTAGTCCA
Medicago arabica genome assembly, chromosome: 6.
OX326969.1:28791744-28791766
TTATATATACTTGCAGGTAAGAAGCAGAAA28791744GTTGAACATTTATGGAAGTTGGAGGGAGCAACAAAAAGACTCTAACTAGTCCA
Medicago arabica genome assembly, chromosome: 8.
OX326971.1:34904361-34904383
TTATATATACTTGCAGGTAAGAAGCAGAAA34904361GTTGAACATTTATGGAAGTTGGAGGGAGCAACAAAAAGACTTTAACTAGTCCA
Medicago lupulina genome assembly, chromosome: 1.
OY283139.1:67337349-67337371
TTATATATACTTGCAGGTAAGAAGCAGAAA67337349GTTGAACATTTATGGAAGTTGGAGGGAGCAACAGAAAGCCTCAAACTAGTCCA
Medicago lupulina genome assembly, chromosome: 1.
OY283139.1:67349457-67349479
TTATATATACTTGCAGGTAAGAAGCAGAAA67349457GTTGAACATTTATGGAAGTTGGAGGGAGCAACAGAAAGCCTCAAACTAGTCCA
Astragalus glycyphyllos genome assembly, chromosome: 5.
OY754311.1:19737515-19737537
ACTTATGTATATACAGGGAAGCAGAAGAAA19737515GTTGAACATTTATGGAAGTTGGAAGGAGCAACAGAAAGACTTCAACTAGTCCA
Lathyrus sativus genome assembly, chromosome: 1.
OZ012735.1:884236212-884236234
ATGTAAATATGTGTAGGGAAGAAGAAAAAA884236212GTTGAACATTTATGGAAGTTGGAAGGAGCAACAGAAAGACTCGAATTAGTCCA
Medicago arabica genome assembly, chromosome: 2.
OX326965.1:21164779-21164801
TGGACTAGTTAGAGTCTTTTTGTTGCTCCC21164779TCCAACTTCCATAAATGTTCAACTTTCTGCTTCTTACCTGCAAGTATATATAA
Medicago arabica genome assembly, chromosome: 8.
OX326971.1:55813052-55813074
TGGACTAGTTCGAGTCTTTCTGTTGCTCCT55813052TCCAACTTCCATAAATGTTCAACTTTCTGCTTCTTACCTGCAAGTATATATAA
Medicago lupulina genome assembly, chromosome: 1.
OY283139.1:88990511-88990533
TGAACTAGTTCAAGTCTTTCTGTTGCTCCT88990511TCCAACTTCCATAAATGTTCAACTTTCTGCTTCTTACCTGCAAGTATATATAA
Medicago lupulina genome assembly, chromosome: 4.
OY283142.1:58739417-58739439
TGGACTAGTTTGAGGCTTTCTGTTGCTTCC58739417TCCAACTTCCATAAATGTTCAACTTCCTGTTACATGTACTTTGTGTTCCATAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTGAACATTTATGGAAGTTGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTGAACATTTATGGAAGTTGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.177 | 0.168 | search_plus_done; http://172.18.8.135:50400/match?q=GTTGAACATTTATGGAAGTTGGA&k=0&no_gap=0&offset=0&limit=50
0.211 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=TCCAACTTCCATAAATGTTCAAC&k=0&no_gap=0&offset=0&limit=40
0.214 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).