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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-09 18:36:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Pyrus x bretschneideri Unigene12436_XinShao mRNA sequence.
JR607437.1:937-958
CTTCTGCTCCGAGTCGTCCAGAAACTCCTT937GTTGCAAGAGTTGCATGTTAGCCCTGACATTCTCTCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:17762752-17762773
CTTCTGCTCCGAGTCGTCCAGAAACTCCTT17762752GTTGCAAGAGTTGCATGTTAGCCCTGACATTCTCTCTCTCTCTCTCTCTCTC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:44774424-44774445
CTTCTGCTCTGAGTCGTCCAGAAACTCCTT44774424GTTGCAAGAGTTGCATGTTAGCCCTGACATTCTCTCTCTCTCTCTCTCTCTC
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141934.1:18961857-18961878
CTTCTGCTCCGAGTCGTCCAGAAACTCCTT18961857GTTGCAAGAGTTGCATGTTAGCCCTGACATTCTCTCTCTCTCTCTCTCTCTC
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:12856096-12856117
CTTCTGCTCTGAGTCGTCCAGAAACTCCTT12856096GTTGCAAGAGTTGCATGTTAGCCCTCACATTTTCTCTCTCTCTAGCTTTCTC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:48762716-48762737
CTTCTGCTCTGAGTCGTCCAGAAACTCCTT48762716GTTGCAAGAGTTGCATGTTAGCCCTGACATTCTCTCTCTCTCTCTCTCTCTC
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141960.1:18511516-18511537
CTTCTGCTCCGAGTCGTCCAGAAACTCCTT18511516GTTGCAAGAGTTGCATGTTAGCCCTGACATTCTCTCTCTCTCTCTCTCTCTC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:44625101-44625122
CTTCTGCTCTGAGTCGTCCAGAAACTCCTT44625101GTTGCAAGAGTTGCATGTTAGCCCTGACATTCTCTCTCTCTCTCTCTCTCTC
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141977.1:18516822-18516843
CTTCTGCTCCAAGTCGTCCAGAAACTCCTT18516822GTTGCAAGAGTTGCATGTTAGCCCTGACATTCTCTCTCTCTCTCTCTCTCTG
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:45452372-45452393
CTTCTGCTCTGAGTCGTCCAGAAACTCCTT45452372GTTGCAAGAGTTGCATGTTAGCCCTGACATTCTCTCTCTCTCTCTCTCTCTC
Malus domestica genome assembly, chromosome: 13.
OU696689.1:13237628-13237649
CTTCTGCTCTGAGTCGTCCAGAAACTCCTT13237628GTTGCAAGAGTTGCATGTTAGCCCTCACATTTTCTCTCTCTCTAGCTTTCTC
Malus domestica genome assembly, chromosome: 13.
OU744965.1:13109847-13109868
CTTCTGCTCTGAGTCGTCCAGAAACTCCTT13109847GTTGCAAGAGTTGCATGTTAGCCCTCACATTTTCTCTCTCTCTAGCTTTCTC
Malus domestica genome assembly, chromosome: 13.
OU745003.1:12909442-12909463
CTTCTGCTCTGAGTCGTCCAGAAACTCCTT12909442GTTGCAAGAGTTGCATGTTAGCCCTCACATTTTCTCTCTCTCTAGCTTTCTC
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:44349767-44349788
CTTCTGCTCTGAGTCGTCCAGAAACTCCTT44349767GTTGCAAGAGTTGCATGTTAGCCCTGACATTCTCTCTCTCTCTCTCTCTCTC
Crataegus laevigata genome assembly, chromosome: 7.
OY756944.1:32229182-32229203
CTTCTGCTCTGAGTCGTCCAGAAACTCCTT32229182GTTGCAAGAGTTGCATGTTAGCCCTGACATTCTCTCTCTCTCTCTCTCTCTG
Mdrta1013P13.g1 Apple_EST_Mdrta Malus domestica cDNA similar to ref|NP_180026.1| C2H2-type zinc finger protein -related [Arabidopsis thaliana] pir|T52423 C2H2 zinc finger protein FZF [imported] - Arab
DT001958.1:67-88
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG67GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAGAAG
010603AAWA005916HT (AAWA) Royal Gala 59 DAFB seeds Malus domestica cDNA clone AAWA005916, mRNA sequence.
EB133442.1:127-148
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG127GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAGAAG
010605AAWA006266HT (AAWA) Royal Gala 59 DAFB seeds Malus domestica cDNA clone AAWA006266, mRNA sequence.
EB134073.1:140-161
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG140GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAAAAG
Mdfws2068H06.g1 Apple_EST_Mdfws Malus domestica cDNA 5' similar to ref|NP_180026.1| C2H2-type zinc finger protein -related [Arabidopsis thaliana] pir|T52423 C2H2 zinc finger protein FZF [imported] - A
GO509480.1:149-170
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG149GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAGAAG
Malus x domestica C2H2L domain class transcription factor (C2H2L5) mRNA, complete cds.
HM122505.1:126-147
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG126GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAGAAG
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143365.1:11752304-11752325
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG11752304GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCGGAGCAGAAG
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:7638756-7638777
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG7638756GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAGAAG
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:7025383-7025404
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG7025383GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAGAAG
Malus sylvestris genome assembly, chromosome: 8.
OU696510.1:11770281-11770302
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG11770281GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCGGAGCAGAAG
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:7576132-7576153
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG7576132GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAGAAG
Malus domestica genome assembly, chromosome: 8.
OU696684.1:11606810-11606831
CACAGAGAGAGAGAGAGAGAGAATGTCAGG11606810GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCGGAGCAGAAG
Malus domestica genome assembly, chromosome: 15.
OU696691.1:7653126-7653147
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG7653126GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAGAAG
Malus domestica genome assembly, chromosome: 8.
OU744549.1:11700252-11700273
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG11700252GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCGGAGCAGAAG
Malus domestica genome assembly, chromosome: 15.
OU744556.1:7793171-7793192
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG7793171GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAGAAG
Malus domestica genome assembly, chromosome: 8.
OU744960.1:11667169-11667190
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG11667169GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCGGAGCAGAAG
Malus domestica genome assembly, chromosome: 15.
OU744967.1:7711623-7711644
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG7711623GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAGAAG
Malus domestica genome assembly, chromosome: 8.
OU744998.1:11834008-11834029
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG11834008GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCGGAGCAGAAG
Malus domestica genome assembly, chromosome: 15.
OU745005.1:7542281-7542302
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG7542281GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAGAAG
Malus x robusta genome assembly, chromosome: 16.
OY720340.1:12127282-12127303
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG12127282GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCGGAGCAGAAG
Crataegus laevigata genome assembly, chromosome: 12.
OY756949.1:12380447-12380468
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG12380447GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCGGAGCAGAAG
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:6683936-6683957
GAGAGAGAGAGAGAGAGAGAGAATGTCAGG6683936GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCAGAGCAGAAG
Pyrus communis genome assembly, chromosome: 15.
OY757082.1:9385066-9385087
CACTGAGAGAGAAAGAGAGAGAATGTCAGG9385066GCTAACATGCAACTCTTGCAACAAGGAGTTTCTGGACGACTCGGAGCAGAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTGCAAGAGTTGCATGTTAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTGCAAGAGTTGCATGTTAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.213 | 0.204 | search_plus_done; http://172.18.8.135:50400/match?q=GTTGCAAGAGTTGCATGTTAGC&k=0&no_gap=0&offset=0&limit=50
0.595 | 0.382 | search_minus_done; http://172.18.8.135:50400/match?q=GCTAACATGCAACTCTTGCAAC&k=0&no_gap=0&offset=0&limit=35
0.610 | 0.015 | cgi_end;

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