GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 11:44:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019A15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC189249.1:128658-128677
ATGAGATCAGTGAAGTCATCAAACTTTGAG128658GTTGCTTCCAAGCCTATAAATTCGTACTCTGAGGATCCTGAGCTTTCGTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB074G23, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189460.2:1584-1603
ATGAGATCAGTGAAGTCATCAAACTTTGAG1584GTTGCTTCCAAGCCTATAAATTCGTACTCTGAGGATCCTGAGCTTTCGTA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:13095401-13095420
ATGAGATCAGTGAAGTCATCAAACTTTGAG13095401GTTGCTTCCAAGCCTATAAATTCGTACTCTGAGGATCCTGAGCTTTCGTA
KBrB028P15F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB028P15, genomic survey sequence.
DX031988.1:643-662
TACGAAAGCTCAGGATCCTCAGAGTACGAA643TTTATAGGCTTGGAAGCAACCTCAAAGTTTGATGACTTCACTGATCTCAT
KBrB117O19F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB117O19, genomic survey sequence.
ED528000.1:665-684
TACGAAAGCTCAGGATCCTCAGAGTACGAA665TTTATAGGCTTGGAAGCAACCTCAAAGTTTGATGACTTCACTGATCTCAT
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:13349099-13349118
TACGAAAGCTCAGGATCCTCAGAGTACGAA13349099TTTATAGGCTTGGAAGCAACCTCAAAGTTTGATGACTTCACTGATCTCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTGCTTCCAAGCCTATAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTGCTTCCAAGCCTATAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=GTTGCTTCCAAGCCTATAAA&k=0&no_gap=0&offset=0&limit=50
0.186 | 0.074 | search_minus_done; http://172.18.8.135:50400/match?q=TTTATAGGCTTGGAAGCAAC&k=0&no_gap=0&offset=0&limit=47
0.188 | 0.002 | cgi_end;

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