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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:44:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 20407 from patent US 7557201.
GP489410.1:18-37
TAGTTTCTACCGCCGCC18GTTGGCTTCTCTTTGATCGTTTCCCTTCTTGCTTTCTTCAAGCATTAAAT
GR__Eb0034D12.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0034D12 3', mRNA sequence.
CO104523.1:129-148
GGATTCTCAGTCGGAGTTTCTACCGCCGCC129GTTGGCTTCTCTTTGATCGTTTCCCTTCTTGCTTTCTTCAAGCATTAAAT
Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0024_O05, 5' end sequence.
DK956111.1:231-250
GTGGATCCAATGAAGATTAAGAGATCTCAT231GTTGGCTTCTCTTTGATCGTCAATTCAGGACAAAGAGTGAATAGTATCTC
G.hir-seedling 1339 3 and 5 week old seedlings Gossypium hirsutum cDNA, mRNA sequence.
DN818139.1:211-230
GGATTCTCAGTCGGAGTTTCTACCGCCGCC211GTTGGCTTCTCTTTGATCGTTTCCCTTCTTGCTTTCTTCAAGCATTAAAT
GH_LSL07A10.f GH_LSL Gossypium hirsutum cDNA clone GH_LSL07A10 5', mRNA sequence.
DV849117.1:147-166
GGATTCTCAGTCGGAGTTTCTACCGCCGCC147GTTGGCTTCTCTTTGATCGTTTCCCTTCTTGCTTTCTTCAAGCATTAAAT
GH_TMIRS_025_D10_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW498388.1:218-237
GGATTCTCAGTCGGAGTTTCTACCGCCGCC218GTTGGCTTCTCTTTGATCGTTTCCCTTCTTGCTTTCTTCAAGCATTAAAT
GH_TMIRS_075_C04_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW503530.1:218-237
GGATTCTCAGTCGGAGTTTCTACCGCCGCC218GTTGGCTTCTCTTTGATCGTTTCCCTTCTTGCTTTCTTCAAGCATTAAAT
D08-GC8996 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810747.1:218-237
GGATTCTCAGTCGGAGTTTCTACCGCCGCC218GTTGGCTTCTCTTTGATCGTTTCCCTTCTTGCTTTCTTCAAGCATTAAAT
E03-GC11069 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810752.1:218-237
GGATTCTCAGTCGGAGTTTCTACCGCCGCC218GTTGGCTTCTCTTTGATCGTTTCCCTTCTTGCTTTCTTCAAGCATTAAAT
Gossypium hirsutum clone MX100D19-jmf, complete sequence.
AC243152.1:91839-91858
GGATTCTCAGTCGGAGTTTCTACCGCCGCC91839GTTGGCTTCTCTTTGATCGTTTCCCTTCTTGCTTTCTTCAAGCATTAAAT
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:33227393-33227412
GGATTCTCAGTCGGAGTTTCTACCGCCGCC33227393GTTGGCTTCTCTTTGATCGTTTCCCTTCTTGCTTTCTTCAAGCATTAAAT
Papaver somniferum cultivar Roxanne chromosome 2.
CP048214.1:274044183-274044202
TAGGGATAAAGGTGAGCCGCCGGCGATCAT274044183GTTGGCTTCTCTTTGATCGTCTAAAATTTGATCTGAGCCACTCAATTCGG
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:55718078-55718097
GGATTCTCAGTCGGAGTTTCTACCGCCGCC55718078GTTGGCTTCTCTTTGATCGTTTCCCTTCTTGCTTTCTTCAAGCATTAAAT
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:124416752-124416771
GGATTCTCAGTCGGAGTTTCTACCGCCGCC124416752GTTGGCTTCTCTTTGATCGTTTCCCTTCTTGCTTTCTTCAAGCATTAAAT
Tachina lurida genome assembly, chromosome: 4.
OX101755.1:92700023-92700042
TTTCATGGTAAGAACCATCTTTCTTAAAGG92700023GTTGGCTTCTCTTTGATCGTACAATATAATACTTCGATCACTGCAGCAAC
Limanda limanda genome assembly, chromosome: 17.
OY755008.1:19665764-19665783
TGCAAAGCTGAGCCGGGTAGCCACAGTGAC19665764ACGATCAAAGAGAAGCCAACCTGTTTAGGTAATTACCCATGACCACCTAT
GR__Eb0034D12.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0034D12 5', mRNA sequence.
CO104522.1:188-207
ATTTAATGCTTGAAGAAAGCAAGAAGGGAA188ACGATCAAAGAGAAGCCAACGGCGGCGGTAGAAACTCCGACTGAGAATCC
H07_P8_060 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX164973.1:272-291
ATTTAATGCTTGAAGAAAGCAAGAAGGGAA272ACGATCAAAGAGAAGCCAACGGCGGCGGTAGAAACTCCGACTGAGAATCC
BC_005_82 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequence.
EY197590.1:272-291
ATTTAATGCTTGAAGAAAGCAAGAAGGGAA272ACGATCAAAGAGAAGCCAACGGCGGCGGTAGAAACTCCGACTGAGAATCC
rmhcyd0_001083.y1.scf cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO105261.1:244-263
ATTTAATGCTTGAAGAAAGCAAGAAGGGAA244ACGATCAAAGAGAAGCCAACGGCGGCGGTAGAAACTCCGACTGAGAATCC
rcrycc0_0042_H02.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO109737.1:179-198
ATTTAATGCTTGAAGAAAGCAAGAAGGGAA179ACGATCAAAGAGAAGCCAACGGCGGCGGTAGAAACTCCGACTGAGAATCC
rcrycc0_0063_E05.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO111491.1:176-195
ATTTAATGCTTGAAGAAAGCAAGAAGGGAA176ACGATCAAAGAGAAGCCAACGGCGGCGGTAGAAACTCCGACTGAGAATCC
rcrycc0_0063_E11.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO111497.1:182-201
ATTTAATGCTTGAAGAAAGCAAGAAGGGAA182ACGATCAAAGAGAAGCCAACGGCGGCGGTAGAAACTCCGACTGAGAATCC
Gossypium raimondii clone GR__Ba0096K16-hvi, complete sequence.
AC243119.1:9695-9714
ATTTAATGCTTGAAGAAAGCAAGAAGGGAA9695ACGATCAAAGAGAAGCCAACGGCGGCGGTAGAAACTCCGACTGAGAATCC
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:26651457-26651476
ATTTAATGCTTGAAGAAAGCAAGAAGGGAA26651457ACGATCAAAGAGAAGCCAACGGCGGCGGTAGAAACTCCGACTGAGAATCC
Panorpa germanica genome assembly, chromosome: 7.
OY783210.1:4888592-4888611
GTAGGCGATAAGGAACAAGAAGAAAATATT4888592ACGATCAAAGAGAAGCCAACTAAACCCTGACCTATCTATGTTGGCAACGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTGGCTTCTCTTTGATCGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTGGCTTCTCTTTGATCGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.692 | 0.683 | search_plus_done; http://172.18.8.135:50400/match?q=GTTGGCTTCTCTTTGATCGT&k=0&no_gap=0&offset=0&limit=50
1.408 | 0.716 | search_minus_done; http://172.18.8.135:50400/match?q=ACGATCAAAGAGAAGCCAAC&k=0&no_gap=0&offset=0&limit=35
1.415 | 0.007 | cgi_end;

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