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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 19:18:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Musa acuminata AAA Group Unigene80051_B1 mRNA sequence.
JV348006.1:155-174
GGCCGTGATGAGCGCCGTCTCCCCGAACTC155GTTGGTCTCGTTGACCACAGCCGACACCATCTCCGCGGTCACCGCTTCCA
TSA: Musa acuminata AAA Group Unigene76566_NK1 mRNA sequence.
JV389700.1:155-174
GGCCGTGATGAGCGCCGTCTCCCCGAACTC155GTTGGTCTCGTTGACCACAGCCGACACCATCTCCGCGGTCACCGCTTCCA
Allygus modestus genome assembly, chromosome: 5.
OY776116.1:38099709-38099728
TTTGTCATCAACTTTCAGCAAGGACGGTTT38099709GTTGGTCTCGTTGACCACAGTCACTTCAATCTCCTCCTTTGACCTCACCG
Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:55037979-55037998
TGGAAGCGGTGACCGCGGAGATGGTGTCGG55037979CTGTGGTCAACGAGACCAACGAGTTCGGGGAGACGGCGCTCGTCACGGCC
Musa acuminata subsp. malaccensis isolate AA chromosome 6.
CP126375.1:41231013-41231032
TGGAAGCGGTGACCGCGGAGATGGTGTCGG41231013CTGTGGTCAACGAGACCAACGAGTTCGGGGAGACGGCGCTCATCACGGCC
Musa acuminata subsp. malaccensis isolate AA chromosome 17.
CP126386.1:40028917-40028936
TGGAAGCGGTGACCGCGGAGATGGTGTCGG40028917CTGTGGTCAACGAGACCAACGAGTTCGGGGAGACGGCGCTCATCACGGCC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A06.
HG996471.1:40933429-40933448
TGGAAGCGGTGACCGCGGAGATGGTGTCGG40933429CTGTGGTCAACGAGACCAACGAGTTCGGGGAGACGGCGCTCATCACGGCC
Musa schizocarpa genome assembly, chromosome: S06.
LS990921.1:44830179-44830198
TGGGAGCGGTGACCGCGGAGATGGTGTCGG44830179CTGTGGTCAACGAGACCAACGAGTTCGGGGAGACGGCGCTCATCACGGCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

GGGenome by @meso_cacase at DBCLS
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