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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:48:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Pyrus pyrifolia mRNA, contig: contig_22819.
FX402069.1:164-186
GGAGCACCGGCATGCGCGGGAGAACGTGGG164GTTGGTGTTTGAGTCAACGTGAGTGAAAGTGGGTAGAAAGAACAGAAAAGTGG
TSA: Pyrus pyrifolia mRNA, contig: contig_3737revcomp.
FX412633.1:367-389
GGAGCACCGGCACGCGCCGGAGAACGTGGG367GTTGGTGTTTGAGTCAACGTGAGTGAAAGTGGGTAGAAAGAACAGAAAAGTGG
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143382.1:11124913-11124935
GGAGCACCGTCACGCGCCGGAGAGCGTGGG11124913GTTGGTGTTTGAGTCAACGTGAGTGAAAGTGGGTAGAGAGGGGATTTGTCACA
Malus x robusta genome assembly, chromosome: 16.
OY720340.1:11743237-11743259
GGAGCACCGTCACGCGCCGGAGAGCGTGGG11743237GTTGGTGTTTGAGTCAACGTGAGTGAAAGTGGGTAGAGAGGGGATTTGTCACA
Crataegus laevigata genome assembly, chromosome: 12.
OY756949.1:12031375-12031397
GGAGCACCGTCACGCGCCGGAGAGCGTGGG12031375GTTGGTGTTTGAGTCAACGTGAGTGAAAGTGGGTAGAAAGAGAAGGAAAGTGG
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:6568536-6568558
GGAGCACCGGCATGCGCGGGAGAACGTGGG6568536GTTGGTGTTTGAGTCAACGTGAGTGAAAGTGGGTAGAAAGAACAGAAAAGTGG
Pyrus communis genome assembly, chromosome: 15.
OY757082.1:8955655-8955677
GGAGCACCGTCACGCGCCGGAGAGCGTGGG8955655GTTGGTGTTTGAGTCAACGTGAGTGAAAGTGGGTAGAAAGAGAAGGAAAGTGG
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH034_07733m, 5' end sequence.
AB450714.1:199-221
CCACTTTCCTTCTCTTTCTACCCACTTTCA199CTCACGTTGACTCAAACACCAACCCCACGCTCTCCGGCGCGTGACGGTGCTCC
Pyrus pyrifolia mRNA, clone: NFR1_15_33, 5' end sequence, expressed in fruit.
HX746859.1:105-127
CCACTTTCCTTCTCTTTCTACCCACTTTCA105CTCACGTTGACTCAAACACCAACCCCACGCTCTCCGGCGCGTGACGGTGCTCC
TSA: Pyrus x bretschneideri Unigene40614_XinShao mRNA sequence.
JR632304.1:89-111
CCACTTTCCTTCTCTTTCTACCCACTTTCA89CTCACGTTGACTCAAACACCAACCCCACGCTCTCCGGCGCGTGACGGTGCTCC
TSA: Pyrus x bretschneideri Unigene40615_XinShao mRNA sequence.
JR632305.1:254-276
CCACTTTTCTGTTCTTTCTACCCACTTTCA254CTCACGTTGACTCAAACACCAACCCCACGTTCTCCCGCGCATGCCGGTGCTCC
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:18275415-18275437
TGTGACAAATCCCCTCTCTACCCACTTTCA18275415CTCACGTTGACTCAAACACCAACCCCACGCTCTCCGGCGCGTGACGGTGCTCC
Crataegus laevigata genome assembly, chromosome: 7.
OY756944.1:32392399-32392421
GTAACAAATCCCTCTTCCTACCCATTTTCA32392399CTCACGTTGACTCAAACACCAACCCCACGTTCTCCGGCGCGTGCCGGTGCTCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTGGTGTTTGAGTCAACGTGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTGGTGTTTGAGTCAACGTGAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.120 | 0.111 | search_plus_done; http://172.18.8.135:50400/match?q=GTTGGTGTTTGAGTCAACGTGAG&k=0&no_gap=0&offset=0&limit=50
0.268 | 0.148 | search_minus_done; http://172.18.8.135:50400/match?q=CTCACGTTGACTCAAACACCAAC&k=0&no_gap=0&offset=0&limit=43
0.272 | 0.004 | cgi_end;

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