GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 07:23:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2A117TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW722275.1:689-710
GTGTCTGGATTGGTTGTGTTTATGTGTCTT689GTTGTCAGTCCTCGTGATTTGGGGTTTGAAGAGCCTGGGAAAGATATTGAGA
RS2A117TV RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW722276.1:689-710
GTGTCTGGATTGGTTGTGTTTATGTGTCTT689GTTGTCAGTCCTCGTGATTTGGGGTTTGAAGAGCCTGGGAAAGATATTGAGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_17484.
FX670541.1:720-741
TCTCAATCTCTTTCCCAGGCTCTTCAAACC720CCAAATCACGAGGACTGACAACAAGACACATAAACACAACCAATCCAGACAC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:24562211-24562232
TCTCAATCTCTTTCCCAGGCTCTTCAAACC24562211CCAAATCACGAGGACTGACAACAAGACACATAAACACAACCAATCCAGACAC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:24562211-24562232
TCTCAATCTCTTTCCCAGGCTCTTCAAACC24562211CCAAATCACGAGGACTGACAACAAGACACATAAACACAACCAATCCAGACAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTGTCAGTCCTCGTGATTTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTGTCAGTCCTCGTGATTTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.265 | 0.256 | search_plus_done; http://172.18.8.135:50400/match?q=GTTGTCAGTCCTCGTGATTTGG&k=0&no_gap=0&offset=0&limit=50
0.299 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=CCAAATCACGAGGACTGACAAC&k=0&no_gap=0&offset=0&limit=48
0.301 | 0.002 | cgi_end;

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