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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 16:13:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CL06-C4-500-063-B05-CT.F Rangpur lime root, greenhouse plant Citrus limonia cDNA, mRNA sequence.
EY871958.1:234-253
GAGCTTGTTTACTTGGTGATTGATAAACTA234GTTGTGTTTTATTCACCGGCAGCGGAAGCCTTGGCAAAACAAGTGACAGA
Citrus reshni NADP-dependent malic enzyme gene, partial cds.
JX630064.1:266-285
GAGCTTGTTTACTTGGTGATTGATAAACTA266GTTGTGTTTTATTCACCGGCAGCGGAAGCCTTGGCAAAACAAGTGACAGA
UNVERIFIED: Citrus hybrid cultivar isolate CM20 haplotype hp2 malate dehydrogenase-like gene, partial sequence.
KT175664.1:1297-1316
GAGCTTGTTTACTTGGTGATTGATAAACTA1297GTTGTGTTTTATTCACCGGCAGCGGAAGCCTTGGCAAAATAAGTGACAGA
Citrus sinensis isolate CM31 haplotype hp1 malate dehydrogenase gene, partial cds.
KT175675.1:1191-1210
GAGCTTGTTTACTTGGTGATTGATAAACTA1191GTTGTGTTTTATTCACCGGCAGCGGAAGCCTTGGCAAAACAAGTGACAGA
Citrus sinensis isolate CM31 haplotype hp2 malate dehydrogenase gene, partial cds.
KT175676.1:1297-1316
GAGCTTGTTTACTTGGTGATTGATAAACTA1297GTTGTGTTTTATTCACCGGCAGCGGAAGCCTTGGCAAAACAAGTGACAGA
Citrus reticulata isolate CM33 haplotype hp1 malate dehydrogenase gene, partial cds.
KT175679.1:1297-1316
GAGCTTGTTTACTTGGTGATTGATAAACTA1297GTTGTGTTTTATTCACCGGCAGCGGAAGCCTTGGCAAAACAAGTGACAGA
Citrus reticulata isolate CM33 haplotype hp2 malate dehydrogenase gene, partial cds.
KT175680.1:1297-1316
GAGCTTGTTTACTTGGTGATTGATAAACTA1297GTTGTGTTTTATTCACCGGCAGCGGAAGCCTTGGCAAAACAAGTGACAGA
Citrus hanaju isolate CM36 haplotype hp2 malate dehydrogenase gene, partial cds.
KT175682.1:1296-1315
GAGCTTGTTTACTTGGTGATTGATAAACTA1296GTTGTGTTTTATTCACCGGCAGCGGAAGCCTTGGCAAAACAAGTGACAGA
Citrus medica isolate CM57 haplotype hp1 malate dehydrogenase gene, partial cds.
KT175692.1:1297-1316
GAGCTTGTTTACTTGGTGATTGATAAACTA1297GTTGTGTTTTATTCACCGGCAGCGGAAGCCTTGGCAAAACAAGTGACAGA
Citrus medica isolate CM57 haplotype hp2 malate dehydrogenase gene, partial cds.
KT175693.1:1296-1315
GAGCTTGTTTACTTGGTGATTGATAAACTA1296GTTGTGTTTTATTCACCGGCAGCGGAAGCCTTGGCAAAACAAGTGACAGA
Melanostoma mellinum genome assembly, chromosome: 3.
OU612060.1:86204088-86204107
AAATTCTGAAACTACATGTGTTGTATTCTT86204088GTTGTGTTTTATTCACCGGCGGACAATTTTTTCCGATTAGTCCCTGAAAA
Citrus sinensis genome assembly, chromosome: 7.
OY754324.1:22578250-22578269
TCTGTCACTTGTTTTGCCAAGGCTTCCGCT22578250GCCGGTGAATAAAACACAACTAGTTTATCAATCACCAAGTAAACAAGCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTGTGTTTTATTCACCGGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTGTGTTTTATTCACCGGC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.234 | 0.225 | search_plus_done; http://172.18.8.135:50400/match?q=GTTGTGTTTTATTCACCGGC&k=0&no_gap=0&offset=0&limit=50
0.263 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=GCCGGTGAATAAAACACAAC&k=0&no_gap=0&offset=0&limit=39
0.264 | 0.001 | cgi_end;

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