GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:30:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 427 from patent US 9040774.
HK726132.1:72-91
AGTGGCTTTTGAGAGAGGTCACAGTATCAG72GTTTCAGTGTGGTGGCAGTAGCTTATACAGGGAGAGGATATTAGCAAGCA
Sequence 427 from Patent EP2304030.
JA866862.1:72-91
AGTGGCTTTTGAGAGAGGTCACAGTATCAG72GTTTCAGTGTGGTGGCAGTAGCTTATACAGGGAGAGGATATTAGCAAGCA
GR__Ea34C11.r GR__Ea Gossypium raimondii cDNA clone GR__Ea34C11 3', mRNA sequence.
CO074181.1:725-744
AGTGGCTTTTGAGAGAGGTCACAGTATCAG725GTTTCAGTGTGGTGGCAGTAGCTCATACAGGGAGAGGATATTAGCAAGCA
GR__Ea43M24.r GR__Ea Gossypium raimondii cDNA clone GR__Ea43M24 3', mRNA sequence.
CO080378.1:65-84
AGTGGCTTTTGAGAGAGGTCACAGTATCAG65GTTTCAGTGTGGTGGCAGTAGCTCATACAGGGAGAGGATATTAGCAAGCA
Gossypioides kirkii chromosome KI_01.
CP032244.1:4571529-4571548
AGTGGCTTTTGAGAGAGGTCACAGTATCAG4571529GTTTCAGTGTGGTGGCAGTAGCTCATACAGGGAGAGGATAATAGCAAGCA
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:5579895-5579914
AGTGGCTTTTGAGAGAGGTCACAGTATCAG5579895GTTTCAGTGTGGTGGCAGTAGCTCATACAGGGAGAGGATATTAGCAAGCA
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:7309810-7309829
AGAGGCTTTTGAGAGAGGTCACAGTATCAG7309810GTTTCAGTGTGGTGGCAGTAGCTCATACAGGTAGAGGATATTAGCAAGCA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:7517338-7517357
AGTGGCTTTTGAGAGAGGTCACAGTATCAG7517338GTTTCAGTGTGGTGGCAGTAGCTCATACAGGGAGAGGATATTAGCAAGCA
Labrus mixtus genome assembly, chromosome: 13.
OY757296.1:23465799-23465818
ATCCCTGCCAACTGAAACAGGCAGCTGCTC23465799TACTGCCACCACACTGAAACTCACTTTGAGAATTGAGAAACATTAAACTA
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:118338317-118338336
TGCTTGCTAATATCCTCTACCTGTATGAGC118338317TACTGCCACCACACTGAAACCTGATACTGTGACCTCTCTCAAAAGCCTCT
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:190930998-190931017
TGCTTGCTAATATCCTCTCCCTGTATGAGC190930998TACTGCCACCACACTGAAACCTGATACTGTGACCTTTCTCAAAAGCCACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTTCAGTGTGGTGGCAGTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTCAGTGTGGTGGCAGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.229 | 0.220 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTCAGTGTGGTGGCAGTA&k=0&no_gap=0&offset=0&limit=50
0.271 | 0.042 | search_minus_done; http://172.18.8.135:50400/match?q=TACTGCCACCACACTGAAAC&k=0&no_gap=0&offset=0&limit=42
0.273 | 0.002 | cgi_end;

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