GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 06:14:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rana temporaria genome assembly, chromosome: 4.
LR991683.1:23860288-23860307
TATTCACCTTGGATCTCATTAATATCACTT23860288GTTTCATCGCCCTCATCATTGGCGTTGATGTCAGGTGGGACAAGAAATTA
Solanum melongena mRNA, clone: PLA05E17, 5'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045375.1:192-211
ACCACCACCAAGAACAACAAAACGTTACTT192GTTTCATCGCCCTCATCATTGTTCCCACCACCAAAGAATTCCTAAAAGAA
Sarcophaga subvicina genome assembly, chromosome: 2.
OW388081.2:115437465-115437484
AAAAAAATATCGATTCTTACTTACCTCGTC115437465GTTTCATCGCCCTCATCATTCCAGCCGATTTTCTCGATGACTGTTGACAA
Solanum melongena mRNA, clone: PLA05E17, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045376.1:461-480
TTCTTTTAGGAATTCTTTGGTGGTGGGAAC461AATGATGAGGGCGATGAAACAAGTAACGTTTTGTTGTTCTTGGTGGTGG
Sarcophaga variegata genome assembly, chromosome: 2.
OW026359.1:100806982-100807001
TTGTCAACAGTCATCGAGAAAATCGGCTGG100806982AATGATGAGGGCGATGAAACGATGAGGTAAGTAAGAATCGATATTTTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTTCATCGCCCTCATCATT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTCATCGCCCTCATCATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.180 | 0.172 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTCATCGCCCTCATCATT&k=0&no_gap=0&offset=0&limit=50
0.272 | 0.092 | search_minus_done; http://172.18.8.135:50400/match?q=AATGATGAGGGCGATGAAAC&k=0&no_gap=0&offset=0&limit=47
0.273 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).