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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 08:11:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Acomys russatus genome assembly, chromosome: 32.
LR877243.1:37044635-37044653
AAAGTTTATGAAGCATAAAGAAAGGGCAGG37044635GTTTCCCTGCGTCATCAGACATGGCTGCTAAGGCAGAATTATACTGTGC
Anas platyrhynchos genome assembly, chromosome: Z.
LS423640.1:54874968-54874986
CTGGACGTGGTCCTAGGCAACCTGCTCTGG54874968GTTTCCCTGCGTCATCAGAGGGGTTAGACCCAATGACATCCATTCTGTG
Sequence 195580 from Patent EP2090662.
HB846366.1:342-360
CCAAACTCCGAGTAGACATCATGGAAGTTG342GTTTCCCTGCGTCATCAGAGGAAGAGTTCGAAACCATCAAGACCATTGC
Sequence 195585 from Patent EP2090662.
HB846371.1:323-341
CCAAACTCCGAGTAGACATCATGGAAGTTG323GTTTCCCTGCGTCATCAGAGGAAGAGTTCGAAACCATCAAGACCATTGC
BR043724 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-053E10 5', mRNA sequence.
EX059080.1:259-277
CCAAACTCCGAGTAGACATCATGGAAGTTG259GTTTCCCTGCGTCATCAGAGGAAGAGTTCGAAACCATCAAGACCATTGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_39450.
FX738356.1:355-373
CCAAACTCCGAGTAGACATCATGGAAGTTG355GTTTCCCTGCGTCATCAGAGGAAGAGTTCGAAACCATCAAGACCATTGC
obu86b07.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH946650.1:346-364
CCAAACTCCGAGTAGACATCATGGAAGTTG346GTTTCCCTGCGTCATCAGAGGAAGAGTTCGAAACCGTCAAAACCATAGC
Equus caballus GSS, BAC clone CH241-192A12, SP6 end sequence.
CU092060.1:397-415
GGTAGACATACAAAGAAGGAAATGGGAAGA397GTTTCCCTGCGTCATCAGACACAAAAGAATACTTAAGCATCTTTGTTTT
Brassica rapa subsp. pekinensis methylthioalkylmalate synthase (MAM1-1) mRNA, partial cds.
FJ376038.1:340-358
CCAAACTCCGAGTAGACATCATGGAAGTTG340GTTTCCCTGCGTCATCAGAGGAAGAGTTCGAAACCATCAAGACCATTGC
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:28806714-28806732
CCAAACTCCGAGTAGACATCATGGAAATTG28806714GTTTCCCTGCGTCATCAGAGGAAGAGTTCGAAACCGTCAAAACCATAGC
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:10867074-10867092
CCAAACTACGAGTAGACATCATGGAAGTTG10867074GTTTCCCTGCGTCATCAGAGGAAGAGTTCGAAACCGTCAAGACCATAGC
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:10886860-10886878
CCAAACTACGAGTAGACATCATGGAAGTTG10886860GTTTCCCTGCGTCATCAGAGGAAGAGTTCGAAACCGTCAAGACCATAGC
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:8586162-8586180
CAAAACTCCGAGTAGACATCATGGAAGTTG8586162GTTTCCCTGCGTCATCAGAGGAAGAGTTCGAAACCGTCAAGACCATAGC
Oligia strigilis genome assembly, chromosome: 2.
OX637542.1:8192804-8192822
CAAAGGGCAATGGATAGGGCTATGCTTGGA8192804GTTTCCCTGCGTCATCAGAAATGAAGATATCCGCAGGAGAAACAAGGTA
Oligia fasciuncula genome assembly, chromosome: 2.
OY720388.1:7993176-7993194
CAAAGGGCAATGGATAGGGCTATGCTTGGA7993176GTTTCCCTGCGTCATCAGAAATGAACATATCCGCAGGAGAAACAAGGTA
Acomys kempi genome assembly, chromosome: 14.
OU015368.1:11967998-11968016
GTACAGTATAATTCTGCCTTAGCAGCCATG11967998TCTGATGACGCAGGGAAACCCTGCCCTTTCTTTATGCTCCATAAACTTT
Acomys dimidiatus genome assembly, chromosome: 14.
OU015387.1:11908252-11908270
GTACAGTATAATTCTGCCTTAGCAGCCATG11908252TCTGATGACGCAGGGAAACCCTGCCCTTTCTTTATACTCCATAAACTTT
Acomys percivali genome assembly, chromosome: 14.
OU015755.1:11710061-11710079
GTACAGTATAATTCTGCCTTAGCAGCCATG11710061TCTGATGACGCAGGGAAACCCTGCCCTTTCTTTATGCTCCATAAACTTT
Anas acuta genome assembly, chromosome: Z.
OZ009965.1:57179693-57179711
CACAGAATGGATGTCATTGGGTCTAACCTC57179693TCTGATGACGCAGGGAAACCCAGAGCAGGTTGCCTAGGACCACGTCCAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_36546.
FX703051.1:1085-1103
GCAATGGTCTTGATGGTTTCGAACTCTTCC1085TCTGATGACGCAGGGAAACCAACTTCCATGATGTCTACTCGGAGTTTGG
TSA: Ictalurus punctatus aby_k39:1649678 mRNA sequence.
JT448285.1:1032-1050
TTCCCTCATCACTCAGAGAGCTTTATTAGT1032TCTGATGACGCAGGGAAACGTCTTGATGACGATAACAGCCCCTTCACCT
TSA: Ictalurus punctatus aby_k45:1402322 mRNA sequence.
JT458826.1:996-1014
TTCCCTCATCACTCAGAGAGCTTTATTAGT996TCTGATGACGCAGGGAAACGTCTTGATGACGATAACAGCCCCTTCACCT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:21771524-21771542
GCAATGGTCTTGATGGTTTCGAACTCTTCC21771524TCTGATGACGCAGGGAAACCAACTTCCATGATGTCTACTCGGAGTTTGG
Brassica napus genome assembly, chromosome: A03.
HG994357.1:21757783-21757801
GCAATGGTCTTGATGGTTTCGAACTCTTCC21757783TCTGATGACGCAGGGAAACCAACTTCCATGATGTCTACTCGGAGTTTGG
Brassica napus genome assembly, chromosome: C01.
HG994365.1:27317874-27317892
GCTATGGTTTTGACGGTTTCGAACTCTTCC27317874TCTGATGACGCAGGGAAACCAACTTCCATGATGTCTACTCGGAGTTTGG
Brassica napus genome assembly, chromosome: C07.
HG994371.1:44904025-44904043
GCTATGGTCTTGACGGTTTCGAACTCTTCC44904025TCTGATGACGCAGGGAAACCAACTTCCATGATGTCTACTCGTAGTTTGG
Brassica napus genome assembly, chromosome: C07.
HG994371.1:44923815-44923833
GCTATGGTCTTGACGGTTTCGAACTCTTCC44923815TCTGATGACGCAGGGAAACCAACTTCCATGATGTCTACTCGTAGTTTGG
Brassica rapa genome, scaffold: A03.
LR031572.1:21584393-21584411
GCAATGGTCTTGATGGTTTCGAACTCTTCC21584393TCTGATGACGCAGGGAAACCAACTTCCATGATGTCTACTCGGAGTTTGG
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:47764799-47764817
GCTATGGTCTTGACGGTTTCGAACTCTTCC47764799TCTGATGACGCAGGGAAACCAACTTCCATGATGTCTACTCGTAGTTTGG
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:47784565-47784583
GCTATGGTCTTGACGGTTTCGAACTCTTCC47784565TCTGATGACGCAGGGAAACCAACTTCCATGATGTCTACTCGTAGTTTGG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:27438421-27438439
GCTATGGTTTTGACGGTTTCGAACTCTTCC27438421TCTGATGACGCAGGGAAACCAACTTCCATGATGTCTACTCGGAGTTTGG
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:45064340-45064358
GCTATGGTCTTGACGGTTTCGAACTCTTCC45064340TCTGATGACGCAGGGAAACCAACTTCCATGATGTCTACTCGGAGTTTTG
Aegilops longissima genome assembly, chromosome: 3S.
LR881071.1:614775649-614775667
TCGCATGTGTGGTATCGGTGATTAAACGTT614775649TCTGATGACGCAGGGAAACCATATGGTCTGTCGTAATGAACCGTTTGGG
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:21712452-21712470
GCAATGGTCTTGATGGTTTCGAACTCTTCC21712452TCTGATGACGCAGGGAAACCAACTTCCATGATGTCTACTCGGAGTTTGG
Oligia latruncula genome assembly, chromosome: 2.
OX419685.1:14806955-14806973
TACCTTGTTTCTCCTGCGGATATCTTCATT14806955TCTGATGACGCAGGGAAACTCCAAGCATAGCCCTATCCATTGCCCTTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTTCCCTGCGTCATCAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTCCCTGCGTCATCAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.287 | 0.278 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTCCCTGCGTCATCAGA&k=0&no_gap=0&offset=0&limit=50
0.465 | 0.178 | search_minus_done; http://172.18.8.135:50400/match?q=TCTGATGACGCAGGGAAAC&k=0&no_gap=0&offset=0&limit=35
0.478 | 0.013 | cgi_end;

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