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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:36:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BR064631 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-039D09 5', mRNA sequence.
EX079987.1:548-567
AGTGTTCCTATATATCATGGTGTTTGGTAT548GTTTCCTTTCACCGCAGTCCTCGGCCTCGACACGAACAGCAACAACCTTG
BR067683 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-085D04 5', mRNA sequence.
EX083039.1:508-527
AGTGTTCCTATATATCATGGTGTTTGGTAT508GTTTCCTTTCACCGCAGTCCTCGGCCTCGACACGAACAGCAACAACCTTG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_23272.
FX698118.1:569-588
AGTGTTCCTATATATCATGGTGTTTGGTAT569GTTTCCTTTCACCGCAGTCCTCGGCCTCGACACGAACAGCAACAACCTTG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:57701888-57701907
AGTGTTCCTATATATCATGGTGTTTGGTAT57701888GTTTCCTTTCACCGCAGTCCTCGGCCTCGACACGAACAGCAACAACCTTG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:41585135-41585154
AGTGTTCCTATATATCATGGTGTTTGGTAT41585135GTTTCCTTTCACCGCAGTCCTCGGCCTCGACACGAACAGCAACAACCTTG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:26850846-26850865
AGTGTTCCTATAGATCATGGTGTTTGGTAT26850846GTTTCCTTTCACCGCAGTCCTCGGCCTCGACACGAACAGCAACAACCTTG
Brassica rapa genome, scaffold: A09.
LR031568.1:45911105-45911124
AGTGTTCCTATATATCATGGTGTTTGGTAT45911105GTTTCCTTTCACCGCAGTCCTCGGCCTCGACACGAACAGCAACAACCTTG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:36012219-36012238
AGTGTTCCTATAGATCATGGTGTTTGGTAT36012219GTTTCCTTTCACCGCAGTCCTCGGCCTCGACACGAACAGCAACAACCTTG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:56371676-56371695
AGTGTTCCTATATATCATGGTGTTTGGTAT56371676GTTTCCTTTCACCGCAGTCCTCGGCCTCGACACGAACAGCAACAACCTTG
Sequence 181343 from Patent EP2090662.
HB832129.1:1484-1503
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA1484GGACTGCGGTGAAAGGAAACATACCAAACACCATGATCTATAGGAACACT
Sequence 181429 from Patent EP2090662.
HB832215.1:1542-1561
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA1542GGACTGCGGTGAAAGGAAACATACCAAACACCATGATCTATAGGAACACT
Sequence 1376 from patent US 10760088.
MV631115.1:1514-1533
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA1514GGACTGCGGTGAAAGGAAACATACCAAACACCATGATCTATAGGAACACT
Sequence 1378 from patent US 10760088.
MV631117.1:1563-1582
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA1563GGACTGCGGTGAAAGGAAACATACCAAACACCATGATCTATAGGAACACT
Sequence 1380 from patent US 10760088.
MV631119.1:1244-1263
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA1244GGACTGCGGTGAAAGGAAACATACCAAACACCATGATATATAGGAACACT
Sequence 1376 from patent US 11111499.
MY422998.1:1514-1533
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA1514GGACTGCGGTGAAAGGAAACATACCAAACACCATGATCTATAGGAACACT
Sequence 1378 from patent US 11111499.
MY423000.1:1563-1582
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA1563GGACTGCGGTGAAAGGAAACATACCAAACACCATGATCTATAGGAACACT
Sequence 1380 from patent US 11111499.
MY423002.1:1244-1263
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA1244GGACTGCGGTGAAAGGAAACATACCAAACACCATGATATATAGGAACACT
Brassica oleracea var. viridis mRNA, clone: KALE-082B21, 3' end sequence.
DK546536.1:219-238
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA219GGACTGCGGTGAAAGGAAACATACCAAACACCATGATCTATAGGAACACT
Brassica oleracea var. viridis mRNA, clone: KALE-107A05, 3' end sequence.
DK556056.1:232-251
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA232GGACTGCGGTGAAAGGAAACATACCAAACACCATGATCTATAGGAACACT
BR039460 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-141F08 5', mRNA sequence.
EX054816.1:252-271
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA252GGACTGCGGTGAAAGGAAACATACCAAACACCATGATATATAGGAACACT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_10440.
FX728779.1:1570-1589
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA1570GGACTGCGGTGAAAGGAAACATACCAAACACCATGATATATAGGAACACT
Brassica napus mRNA for sulphate transporter (bst3.1 gene).
AJ581745.1:1563-1582
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA1563GGACTGCGGTGAAAGGAAACATACCAAACACCATGATCTATAGGAACACT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:14959580-14959599
CAAGGTTGTTGCTGTTCGTGTCGAGGCCGA14959580GGACTGCGGTGAAAGGAAACATACCAAACACCATGATCTATAGGAACACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTTCCTTTCACCGCAGTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTCCTTTCACCGCAGTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.256 | 0.247 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTCCTTTCACCGCAGTCC&k=0&no_gap=0&offset=0&limit=50
0.845 | 0.589 | search_minus_done; http://172.18.8.135:50400/match?q=GGACTGCGGTGAAAGGAAAC&k=0&no_gap=0&offset=0&limit=41
0.854 | 0.009 | cgi_end;

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