GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:11:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Camellia sinensis mRNA, clone: LR11C01, 5' end sequence, expressed in lateral roots.
FS944108.1:15-35
AAACCATTGCTCCT15GTTTCTTGCACGCACGCAGAGGGACAGAGAGAGAGAGAGAGAAGATGCACG
EST0804 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_04_92.M13+_D12.ab1, mRNA sequence.
GE650477.1:43-63
CGGCCGGGGAACCCACAAACCATTGCTCCT43GTTTCTTGCACGCACGCAGAGGGACAGAGAGAGAGAGAGGGAAGATGCACG
EST1110 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_09_20.M13+_D03.ab1, mRNA sequence.
GE650783.1:43-63
CGGCCGGGGAACCCACAAACCATTGCTCCT43GTTTCTTGCACGCACGCAGAGGGACAGAGAGAGAGAGAGAGAGAGAGAGAG
EST1768 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_17_91.M13+_C12.ab1, mRNA sequence.
GE651441.1:43-63
CGGCCGGGGAACCCACAAACCATTGCTCCT43GTTTCTTGCACGCACGCAGAGGGACAGAGAGAGAGAGAGAAGATGCACGGA
EST3266 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08012802-OUYI_CHAG_39_56.M13+_H07, mRNA sequence.
GE652939.1:31-51
TATCGGCCATTACGGCCGGGGATTGCTCCT31GTTTCTTGCACGCACGCAGAGGGACAGAGAGAGAGAGAGAGAAGATGCACG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTTCTTGCACGCACGCAGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTCTTGCACGCACGCAGAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.757 | 0.749 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTCTTGCACGCACGCAGAG&k=0&no_gap=0&offset=0&limit=50
0.782 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=CTCTGCGTGCGTGCAAGAAAC&k=0&no_gap=0&offset=0&limit=45
0.782 | 0.000 | cgi_end;

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