GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 07:34:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Humulus lupulus var. lupulus mRNA, contig: comp289109_c6_seq1.
LA496583.1:107-126
CATGCCGTAGCGGAAAGCCTGGCTCAAGTT107GTTTGCTAGGGCTGCAACATCATAATCTCTATCTTGGTAATCATCATCAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp289109_c6_seq2.
LA496584.1:343-362
CATGCCGTAGCGGAAAGCCTGGCTCAAGTT343GTTTGCTAGGGCTGCAACATCATAATCTCTATCTTGGTAATCATCATCAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp289109_c6_seq4.
LA496586.1:343-362
CATGCCGTAGCGGAAAGCCTGGCTCAAGTT343GTTTGCTAGGGCTGCAACATCATAATCTCTATCTTGGTAATCATCATCAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp289109_c6_seq7.
LA496589.1:107-126
CATGCCGTAGCGGAAAGCCTGGCTCAAGTT107GTTTGCTAGGGCTGCAACATCATAATCTCTATCTTGGTAATCATCATCAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp289109_c6_seq9.
LA496591.1:343-362
CATGCCGTAGCGGAAAGCCTGGCTCAAGTT343GTTTGCTAGGGCTGCAACATCATAATCTCTATCTTGGTAATCATCATCAT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp289109_c6_seq10.
LA496592.1:107-126
CATGCCGTAGCGGAAAGCCTGGCTCAAGTT107GTTTGCTAGGGCTGCAACATCATAATCTCTATCTTGGTAATCATCATCAT
Daucus carota subsp. sativus cultivar DH1 chromosome 1.
CP093343.1:47709764-47709783
TATGCCATATCTAAAAGCCTGGCTAAGATT47709764GTTTGCTAGGGCTGCAACATCATAATCTCTGTCTTGATAATCATCATCAT
Daucus carota isolate Kuroda chromosome 1.
CP125301.1:48977754-48977773
TATGCCATATCTAAAAGCCTGGCTAAGATT48977754GTTTGCTAGGGCTGCAACATCATAATCTCTGTCTTGATAATCATCATCAT
Tetradesmus obliquus strain DOE0152z chromosome 16b.
CP126223.1:1372991-1373010
AATGCAGCAGGTGCAACAGCATGCTTTGCT1372991GTTTGCTAGGGCTGCAACATAACTAGTGCGCAGTCACACAACTTGGCATG
Humulus lupulus genome assembly, chromosome: 9.
OY720656.1:20494065-20494084
CATGCCGTAGCGGAAAGCCTGGCTCAAGTT20494065GTTTGCTAGGGCTGCAACATCATAATCTCTATCTTGGTAATCATCATCAT
Ovis canadensis canadensis isolate 43U chromosome 5 sequence.
CP011890.1:26984986-26985005
TTGTTTAAGTCACCCAGTATGTGGTATTTT26984986ATGTTGCAGCCCTAGCAAACTGATACATCTTTCTTGGATGGTGGTGGGTT
Urtica urens genome assembly, chromosome: 5.
OY282524.1:5547584-5547603
ATGATGATGATTACCAAGATAGAGATTATG5547584ATGTTGCAGCCCTAGCAAACAACTTAAGCCAGGCCCTGCGTTATGGAATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTTGCTAGGGCTGCAACAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTGCTAGGGCTGCAACAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.456 | 0.447 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTGCTAGGGCTGCAACAT&k=0&no_gap=0&offset=0&limit=50
0.581 | 0.125 | search_minus_done; http://172.18.8.135:50400/match?q=ATGTTGCAGCCCTAGCAAAC&k=0&no_gap=0&offset=0&limit=40
0.582 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).