GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 10:36:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Hyperoplus immaculatus genome assembly, chromosome: 9.
OX442357.1:23753599-23753618
TTCACTGAATGGCTCGCAGCTCGTTTGATT23753599GTTTGGGCCATCATGAAAAAAACACGAGCCGTCATACAAACAACCGCTAC
Ammodytes marinus genome assembly, chromosome: 8.
OX465152.1:24915592-24915611
TCTACTGAATGGCTCGCAGCTCGTTTGATT24915592GTTTGGGCCATCATGAAAAAAACACGAGACGTCATACAATCAACCGCCAC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:29003442-29003461
TAACGTTGCTGGCATTCTGATCCTTGATTC29003442GTTTGGGCCATCATGAAAAATTTATGGATGGAATACTAAGTTTGTCTAGG
Brassica rapa genome, scaffold: A07.
LR031574.1:27885823-27885842
TAACGTTGCTGGCATTCTGATCCTTGATTC27885823GTTTGGGCCATCATGAAAAAAATTATGGATGGAATACTAAGTTTGTCTAG
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:28229471-28229490
TAACGTTGCTGGCATTCTGATCCTTGATTC28229471GTTTGGGCCATCATGAAAAAAATTATGGATGGAATACTAAGTTTGTCTAG
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628, complete genome.
HG322949.1:5367806-5367825
ACCTACTTCCTGAATGACGTATATACCTCA5367806GTTTGGGCCATCATGAAAAAATCCATCGCCTTTGTTGTCTTCCCCCATTT
Vespertilio murinus genome assembly, chromosome: 12.
OZ004716.1:29564054-29564073
AAAGGTCTGCACATGCATGCTTACAGCAGC29564054TTTTTCATGATGGCCCAAACTTGGAAGTGATCAAGATGTGCTTCAGTAGG
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 878 unordered pieces.
FJ789640.1:962324-962343
CTAGACAAACTTAGTATTCCATCCATAATT962324TTTTTCATGATGGCCCAAACGAATCAAGGATCAGAATGCCAGCAACGTTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB007M04, complete sequence.
AC189209.2:27748-27767
CTAGACAAACTTAGTATTCCATCCATAATT27748TTTTTCATGATGGCCCAAACGAATCAAGGATCAGAATGCCAGCAACGTTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence.
AC189312.2:111041-111060
CTAGACAAACTTAGTATTCCATCCATAATT111041TTTTTCATGATGGCCCAAACGAATCAAGGATCAGAATGCCAGCAACGTTA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:387548-387567
CCTAGACAAACTTAGTATTCCATCCATAAA387548TTTTTCATGATGGCCCAAACGAATCAAGGATCAGAATGCCAGCAACGTTA
Scolopendra mutilans potassium voltage-gated channel protein shaker gene, complete cds.
ON798807.1:104-123
TTTGTTGATGGTGCCACATCTTGAAGGCGC104TTTTTCATGATGGCCCAAACGTTTTCGATCGGGTTTAGATCGGGGGAGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTTGGGCCATCATGAAAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTGGGCCATCATGAAAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.367 | 0.358 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTGGGCCATCATGAAAAA&k=0&no_gap=0&offset=0&limit=50
0.500 | 0.133 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTTCATGATGGCCCAAAC&k=0&no_gap=0&offset=0&limit=44
0.504 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).