GGGenome | Results

2025-04-09 16:41:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11357.
FX731922.1:1016-1035

CTGAGGATTGAACCGACCGTCTAACATCGA1016GTTTGTCGGAGATTGGAGGAACCTCGGTATCGTGGAGACAGCGTCTTCCA

KBrS001P16R KBrS, Brassica rapa Sau3AI BAC library Brassica rapa subsp. pekinensis genomic clone KBrS001P16, genomic survey sequence.
DU827629.1:468-487

CTGAGGATTGAACCGACCGTCTAACATCGA468GTTTGTCGGAGATTGGAGGAACCTCGGTATCGTGGAGACAGCGTCTTCCA

Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:8843117-8843136

CTGAGGATTGAACCGACCGTCTAACATCGA8843117GTTTGTCGGAGATTGGAGGAACCTCGGTATCGTGGAGACAGCGTCTTCCA

Brassica napus genome assembly, chromosome: A01.
HG994355.1:9013391-9013410

CTGAGGATTGAACCGACCGTCTAACATCGA9013391GTTTGTCGGAGATTGGAGGAACCTCGGTATCGTGGAGACAGCGTCTTCCA

Brassica rapa genome, scaffold: A01.
LR031571.1:8904903-8904922

CTGAGGATTGAACCGACCGTCTAACATCGA8904903GTTTGTCGGAGATTGGAGGAACCTCGGTATCGTGGAGACAGCGTCTTCCA

Brassica rapa genome assembly, chromosome: A01.
LS974617.2:8928968-8928987

CTGAGGATTGAACCGACCGTCTAACATCGA8928968GTTTGTCGGAGATTGGAGGAACCTCGGTATCGTGGAGACAGCGTCTTCCA

Sesia apiformis genome assembly, chromosome: 30.
OU611977.1:5404038-5404057

ATGTATCGCAGTAATTTCGACAACTAAATG5404038GTTTGTCGGAGATTGGAGGATTACATTAGATGTATATACATATATATATG

BNARO1GH_T3_022_A10_23NOV2006_080 Brassica napus BNARO1GH Brassica napus cDNA 5', mRNA sequence.
ES901390.1:145-164

TGGAAGACGCTGTCTCCACGATACCGAGGT145TCCTCCAATCTCCGACAAACTCGATGTTAGACGGTCGGTTCAATCCTCAG

BR002028 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-003E01 5', mRNA sequence.
EX017384.1:421-440

TGGAAGACGCTGTCTCCACGATACCGAGGT421TCCTCCAATCTCCGACAAACTCGATGTTAGACGGTCGGTTCAATCCTCAG

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1938.
FX698438.1:846-865

TGGAAGACGCTGTCTCCACGATACCGAGGT846TCCTCCAATCTCCGACAAACTCGATGTTAGACGGTCGGTTCAATCCTCAG

Brassica napus Protein phosphatase type 2c (ABI1) mRNA, complete cds.
MF284702.1:428-447

TGGAAGACGCTGTCTCCACGATACCGAGGT428TCCTCCAATCTCCGACAAACTCGATGTTAGACGGTCGGTTCAATCCTCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.156 | 0.147 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTGTCGGAGATTGGAGGA&k=0&no_gap=0&offset=0&limit=50
0.294 | 0.138 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTCCAATCTCCGACAAAC&k=0&no_gap=0&offset=0&limit=43
0.297 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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