GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 08:08:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

sae37h07.y1 Gm-c1051 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1051-7645 5' similar to TR:Q9SFW3 Q9SFW3 PUTATIVE AUXIN-INDEPENDENT GROWTH PROMOTER, mRNA sequence.
BG725489.1:154-182
AATTACTTCTATTCAAGAACAATCGATAAA154GTTTTTTAGCATTTGGACGAATGGTTGGTTTATGGCCAAAGTATCTCCTACAAGAAAGT
vsu-ars_016645_LI10Contig_21126 VSU-ARS-L10 Phaseolus acutifolius cDNA, mRNA sequence.
HO791612.1:349-377
TATTACTTCTATTCAAGAACAGTCGGTAGA349GTTTTTTAGCATTTGGACGAATGGTTGGTTTATGCCCAAAGTATCTCCTTCGTCCGGCT
TSA: Cajanus cajan cultivar UPAS 120 contig06151.UPAS mRNA sequence.
EZ623868.1:1094-1122
AATTACTTCTATTCAAGAATAATCGATAGA1094GTTTTTTAGCATTTGGACGAATGGTTGGTTTATGCCCAAAGTATCTCCTTCGCCCGGCT
VUK122H07.R VUK Phaseolus vulgaris genomic 3', genomic survey sequence.
JY790408.1:136-164
TATTACTTCTATTCAAGAACAGTCGGTAGA136GTTTTTTAGCATTTGGACGAATGGTTGGTTTATGCCCAAAGTATCTCCTACAAAAAAGT
VUL100O10.F VUL Phaseolus vulgaris genomic 5', genomic survey sequence.
JY955563.1:572-600
TATTACTTCTATTCAAGAACAGTCGGTAGA572GTTTTTTAGCATTTGGACGAATGGTTGGTTTATGCCCAAAGTATCTCCTACAAAAAAGT
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC H096A23, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.
AC273962.1:12597-12625
TGTTTGTTCTATTCAAGAACAATCGGTAGA12597GTTTTTTAGCATTTGGACGAATGGTTGGTTTATGCCCAAAGTATCTCCTACAAGAAAGT
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC M059I06, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.
AC274835.1:86673-86701
TGTTTGTTCTATTCAAGAACAATCGGTAGA86673GTTTTTTAGCATTTGGACGAATGGTTGGTTTATGCCCAAAGTATCTCCTACAAGAAAGT
Glycine max strain Williams 82 clone GM_WBb0115J10, complete sequence.
AC235387.1:61585-61613
AATTACTTCTATTCAAGAACAATCGATAAA61585GTTTTTTAGCATTTGGACGAATGGTTGGTTTATGGCCAAAGTATCTCCTACAAGAAAGT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-03.
CP023115.1:33640259-33640287
AATTACTTCTGCCTAAGAACAATCGATAGA33640259GTTTTTTAGCATTTGGACGAATGGTTGGTTTGTGCCCGAAGTACCTCCTATAAGAAAGC
Vigna unguiculata cultivar Xiabao 2 chromosome Vu09.
CP039355.1:52142403-52142431
TGTTTGTTCTATTCAAGAACAATCGGTAGA52142403GTTTTTTAGCATTTGGACGAATGGTTGGTTTATGCCCAAAGTATCTCCTACAAGAAAGT
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:57525090-57525118
AATTACCTCTGTTCATGAACAATCTGTAGA57525090GTTTTTTAGCATTTGGACGAATGGTTGGTTTGTGCCCAAAGTATCTCCTAGAAGAAAAT
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:59853902-59853930
AATTACCTCTGTTCATGAACAACCGGTAGA59853902GTTTTTTAGCATTTGGACGAATGGTTGGTTTGTGCCCAAAGTATCTCCTAGAAGAAAAT
Medicago arabica genome assembly, chromosome: 4.
OX326967.1:63019409-63019437
AATTACTTCTGTTCATGAACAATCTGTAGA63019409GTTTTTTAGCATTTGGACGAATGGTTGGTTTGTGACCAAAGTATCTCCTATAAGAAAGT
Ailanthus altissima genome assembly, chromosome: 9.
OX327691.1:25382428-25382456
TGTTGGTCTGGTTCAAGAACAACCTATAGA25382428GTTTTTTAGCATTTGGACGAATGGTTGGTTTGTGCCCAAAATATCTCCTGCAATAAAAG
Trifolium subterraneum genome assembly, chromosome: 8.
OX637468.1:54209748-54209776
AATTACCTCTGTTCATGAACAATCTGTAGA54209748GTTTTTTAGCATTTGGACGAATGGTTGGTTTGTGCCCAAAGTATCTCCTATAAGAAAAT
Trifolium dubium genome assembly, chromosome: 2.
OX638063.1:43748038-43748066
AATTACTTTTGTTCATGAGCAATCTGTAGA43748038GTTTTTTAGCATTTGGACGAATGGTTGGTTTGTGCCCAAAGTATCTCCTATAAGAAAGT
Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:57417986-57418014
AATTACCTCTGTTCATGAACAATCTGTAGA57417986GTTTTTTAGCATTTGGACGAATGGTTGGTTTGTGCCCAAAGTATCTCCTATAAGAAAAT
Lathyrus sativus genome assembly, chromosome: 5.
OZ012739.1:677708425-677708453
AATTACTTCTGTTCAAGAACAATCTGTAGA677708425GTTTTTTAGCATTTGGACGAATGGTTGGTTTGTGCCCAAAGTATCTCCTATAAGACACG
Sequence 1941 from patent US 8692064.
HJ925796.1:1296-1324
GGCTGGACGAAGGAGATACTTTGGCCATAA1296ACCAACCATTCGTCCAAATGCTAAAAAACTTTATCGATTGTTCTTGAATAGAAGTAATT
Sequence 74376 from patent US 9012723.
HK638030.1:1089-1117
GGCTGGACGAAGGAGATACTTTGGCCATAA1089ACCAACCATTCGTCCAAATGCTAAAAAACTTTATCGATTGTTCTTGAATAGAAGTAATT
Sequence 34364 from patent US 9029636.
HK943427.1:1089-1117
GGCTGGACGAAGGAGATACTTTGGCCATAA1089ACCAACCATTCGTCCAAATGCTAAAAAACTTTATCGATTGTTCTTGAATAGAAGTAATT
N100123e rootphos(-) Medicago truncatula cDNA clone MHRP-2C7, mRNA sequence.
AW125928.2:356-384
AGCCGGACGAAGGAGATACTTTGGTCACAA356ACCAACCATTCGTCCAAATGCTAAAAAACTCTACAGATTGTTCTTGAACAGAAGTAACT
se29e06.y1 Gm-c1015 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1015-2651 5' similar to TR:Q40474 Q40474 AUXIN-INDEPENDENT GROWTH-PROMOTING PROTEIN, mRNA sequence.
AW156690.1:342-370
AGCTGGACGAAGGAGATACTTTGGCCATAA342ACCAACCATTCGTCCAAATGCTAAAAAACTGTATCGATTGTTCTTGAATAGAAGTAATT
MTNAH68TKM KVKC Medicago truncatula cDNA clone pKVKC-8F8, mRNA sequence.
BQ255416.1:345-373
AGCCGGACGAAGGAGATACTTTGGTCACAA345ACCAACCATTCGTCCAAATGCTAAAAAACTCTACAGATTGTTCTTGAACAGAAGTAACT
vsu-ars_028125_LI15contig_15185 VSU-ARS-L15 Phaseolus acutifolius cDNA, mRNA sequence.
HO803092.1:453-481
AGCCGGACGAAGGAGATACTTTGGGCATAA453ACCAACCATTCGTCCAAATGCTAAAAAACTACTACCGACTGTTCTTGAATAGAAGTAAT
TSA: Cajanus cajan cultivar Asha contig07239.Asha mRNA sequence.
EZ655103.1:676-704
AGCCGGGCGAAGGAGATACTTTGGGCATAA676ACCAACCATTCGTCCAAATGCTAAAAAACTCTATCGATTATTCTTGAATAGAAGTAATT
TSA: Ficus carica mRNA, contig: FICAF01606.
FX378580.1:114-142
AGCCGGACGAAGGAGATATTTTGGGCACAA114ACCAACCATTCGTCCAAATGCTAAAAAACTATACCGATTGTTCTTGGGCAAAGATAACA
TSA: Medicago truncatula Contig5096.Metrroot mRNA sequence.
JR372761.1:3-31
AA3ACCAACCATTCGTCCAAATGCTAAAAAACTCTACAGATTGTTCTTGAACAGAAGTAACT
AIGP, Lupinus angustifolius 83A:476 Lupinus angustifolius 83A:476 genomic intron sequences Lupinus angustifolius genomic, genomic survey sequence.
DU723423.1:363-391
GCTTTCTTATAGGAGGTACTTCGGGCACAA363ACCAACCATTCGTCCAAATGCTAAAAAAC
AIGP, Lupinus angustifolius P27255 Lupinus angustifolius P27255 genomic intron sequences Lupinus angustifolius genomic, genomic survey sequence.
DU723475.1:374-402
GCTTTCTTATAGGAGGTACTTCGGGCACAA374ACCAACCATTCGTCCAAATGCTAAAAAAC
VUK060B03.R VUK Phaseolus vulgaris genomic 3', genomic survey sequence.
JY696578.1:219-247
ACTTTTTTGTAGGAGATACTTTGGGCATAA219ACCAACCATTCGTCCAAATGCTAAAAAACTCTACCGACTGTTCTTGAATAGAAGTAATA
VUK060J09.R VUK Phaseolus vulgaris genomic 3', genomic survey sequence.
JY877591.1:219-247
ACTTTTTTGTACGATATACTTTGGGCATAA219ACCAACCATTCGTCCAAATGCTAAAAAACTCTACCGACTGTTCTTGAATAGAAGTAATA
Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
AP015035.1:1532355-1532383
ACTTTCTTGTAGGAGATACTTTGGGCATAA1532355ACCAACCATTCGTCCAAATGCTAAAAAACTCTACCGATTGTTCTTGAATAGAAGAAACA
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-13.
CP023125.1:7381515-7381543
ACTTTCTTGTAGGAGATACTTTGGACACAA7381515ACCAACCATTCGTCCAAATGCTAAAAAACTCTATCGATTGTTCTTGAGCCGAAGCAATT
Glycine max cultivar Williams 82 chromosome 4.
CP126429.1:1455170-1455198
ACTTTCTTGTAGGAGATACTTTGGCCATAA1455170ACCAACCATTCGTCCAAATGCTAAAAAACTTTATCGATTGTTCTTGAATAGAAGTAATT
Glycine max cultivar Williams 82 chromosome 6.
CP126431.1:1414941-1414969
ACTTTCTTGTAGGAGATACTTTGGCCATAA1414941ACCAACCATTCGTCCAAATGCTAAAAAACTTTATCGATTGTTCTTGAATAGAAGTAATT
Swietenia macrophylla isolate HCNGB_00002344 chromosome 3.
CP135580.1:527592-527620
TTTTGTGTGCAGGAAATATTTTGGGCACAA527592ACCAACCATTCGTCCAAATGCTAAAAAACTCTATCGGCTATTCTTGAACCACACCAACT
UNVERIFIED: Campsiandra comosa voucher K:T. Pennington 341 AIGP gene, partial sequence.
KY320652.1:430-458
ACTTCCCTGTAGGAGATACTTTGGGCATAA430ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Vachellia caven voucher MT:no.386-89 AIGP gene, partial sequence.
KY320654.1:433-461
TATTTCCTGTAGGAGATACTTTGGGCACAA433ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Mimosa quitensis voucher K:Klitgaard 647 AIGP gene, partial sequence.
KY320655.1:432-460
TATTTCCTGTAGGAGATACTTTGGGCATAA432ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Inga cf. edulis Klitgaard 677 voucher K:Klitgaard 677 AIGP gene, partial sequence.
KY320656.1:433-461
TATTTCCTGTAGGAGATACTTTGGGCATAA433ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Parkia multijuga voucher K:voucher Klitgaard 697 AIGP gene, partial sequence.
KY320657.1:433-461
TATTTCATGTAGGAGATACTTTGGGCACAA433ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Calliandra trinervia voucher K:Klitgaard 622 AIGP gene, partial sequence.
KY320658.1:433-461
TATTTCCTGTAGGAGATACTTTGGTCACAA433ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Calliandra haematocephala voucher MT:Archambault sn AIGP gene, partial sequence.
KY320659.1:433-461
TATTTCCTGTAGGAGATACTTTGGTCACAA433ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Dinizia sp. Folli 4889 voucher K:Folli 4889 AIGP gene, partial sequence.
KY320660.1:433-461
TATTTCCTGTAGGAGATACTTTGGGCACAA433ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Dinizia sp. Folli 4884 voucher K:Folli 4884 AIGP gene, partial sequence.
KY320661.1:433-461
TATTTCCTGTAGGAGATACTTTGGGCACAA433ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Peltophorum pterocarpum voucher US:Herendeen 12-XII-97-2 AIGP gene, partial sequence.
KY320662.1:434-462
TATTTCCTGTAGGCGATCCTTGGGGCACAA434ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Dimorphandra conjugata voucher WAG:Breteler 13800 AIGP gene, partial sequence.
KY320663.1:435-463
GACTTCCTGTAGGAGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Moldenhawera brasiliensis voucher K:Queiroz 5530 AIGP gene, partial sequence.
KY320664.1:435-463
GATTTCCTGTAGGAGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Mora gonggrijpii voucher WAG:Breteler 13792 AIGP gene, partial sequence.
KY320665.1:435-463
GATTTCCTGTAGGAGATAGTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Jacqueshuberia brevipes voucher US:Redden 1240 AIGP gene, partial sequence.
KY320666.1:435-463
GATTTCCTGTAGGAGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Tachigali vasquezii voucher K:Neill 13998 AIGP gene, partial sequence.
KY320667.1:435-463
GATTTCCTGTAGGAGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Tachigali paniculata voucher NY:T.W Henkel 657 AIGP gene, partial sequence.
KY320668.1:435-463
GATTTCCTGTAGGAGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Bussea perrieri voucher P:Randrianasolo 527 AIGP gene, partial sequence.
KY320669.1:435-463
CATTTCCCGTAGGAGATCCTTGGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Schizolobium parahyba voucher K:Klitgaard 694 AIGP gene, partial sequence.
KY320670.1:435-463
GATTTCTTGTAGGAGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Colvillea racemosa voucher MT:Bruneau 1397 AIGP gene, partial sequence.
KY320671.1:435-463
GATTTCCTGCAGGCGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Colvillea racemosa voucher MT:Bruneau 1360 AIGP gene, partial sequence.
KY320672.1:435-463
GATTTCCTGTAGGCGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Delonix boiviniana voucher MT:Bruneau 1381 AIGP gene, partial sequence.
KY320673.1:435-463
GATTTCCTGTAGGCGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Delonix boiviniana voucher MT:Bruneau 1357 AIGP gene, partial sequence.
KY320674.1:435-463
GATTTCCTGTAGGCGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Delonix boiviniana voucher MT:Bruneau 1378 AIGP gene, partial sequence.
KY320675.1:435-463
GATTTCCTGTAGGCGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Delonix boiviniana voucher MT:Bruneau 1401 AIGP gene, partial sequence.
KY320676.1:435-463
GATTTCCTGTAGGCGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Delonix boiviniana voucher MT:Andriamihajarivo 919 AIGP gene, partial sequence.
KY320677.1:435-463
GATTTCCTGTAGGCGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Delonix regia voucher MT:Bruneau s.n. A AIGP gene, partial sequence.
KY320678.1:435-463
GATTTCCTGTAGGCGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
UNVERIFIED: Delonix regia voucher MT:Bruneau s.n. B AIGP gene, partial sequence.
KY320679.1:435-463
GATTTCCTGTAGGCGATACTTTGGGCACAA435ACCAACCATTCGTCCAAATGCTAAAAAACA
Vicia faba genome assembly, chromosome: 2.
OX451737.1:1339059505-1339059533
ACTTTCTTATAGGAGATACTTTGGGCACAA1339059505ACCAACCATTCGTCCAAATGCTAAAAAACTCTACAGATTGTTCATGAACAGAAATAATT
Trifolium dubium genome assembly, chromosome: 15.
OX638076.1:779415-779443
ACTTTCTTATAGGAGATACTTTGGGCACAA779415ACCAACCATTCGTCCAAATGCTAAAAAACTCTACAGATTGCTCATGAACAAAAGTAATT
Medicago lupulina genome assembly, chromosome: 6.
OY283144.1:1341324-1341352
ATTTTCTTATAGGAGATACTTTGGTCACAA1341324ACCAACCATTCGTCCAAATGCTAAAAAACTCTACAGATTGTTCATGAACAGAAGTAATT
Sphenostylis stenocarpa genome assembly, chromosome: 9.
OY731406.1:1959845-1959873
ACTTTCTTGCAGGAGATACTTTGGGCATAA1959845ACCAACCATTCGTCCAAATGCTAAAAAACTCTATCGATTGTTCTTGAATAGAAGTAATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GTTTTTTAGCATTTGGACGAATGGTTGGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTTTTAGCATTTGGACGAATGGTTGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.332 | 0.323 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTTTTAGCATTTGGACGAATGGTTGGT&k=0&no_gap=0&offset=0&limit=50
0.938 | 0.607 | search_minus_done; http://172.18.8.135:50400/match?q=ACCAACCATTCGTCCAAATGCTAAAAAAC&k=0&no_gap=0&offset=0&limit=32
0.970 | 0.032 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).