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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 19:19:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Apodemus sylvaticus genome assembly, chromosome: 6.
OX359303.1:104217382-104217401
CTCTTCAGTCCTTACAGCTTATATAACCTT104217382TAAAAAGATGGGGCCTTGTGAATCTTGCTTGTTTTAGGAGCCATTTAAGA
UCRCS04_0002K21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002K21, mRNA sequence.
CN182568.1:219-238
CCAAACCCGCCTCTCATTTTCTAAAAATTA219CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
UCRPT01_0012P20_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0012P20, mRNA sequence.
CV709514.1:85-104
CCAAACCCGCCTCTCATTTTCTAAAAATTA85CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
CSAD-PNP1242A13 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone CSAD-PNP1242A13 5', mRNA sequence.
DR405300.1:229-248
CCAAACCCGCCTCTCATTTTCTAAAAATTA229CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
IC0AAA34CG01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY273697.1:228-247
CCAAACCCGCCTCTCATTTTCTAAAAATTA228CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
CS00-C1-102-006-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY665875.1:263-282
CCAAACCCGCCTCTCATTTTCTAAAAATTA263CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
CS00-C1-102-024-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY666793.1:265-284
CCAAACCCGCCTCTCATTTTCTAAAAATTA265CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
CS00-C3-704-052-H07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY733317.1:262-281
CCAAACCCGCCTCTCATTTTCTAAAAATTA262CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
LT33-C1-003-102-G06-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY885338.1:223-242
CCAAACCCGCCTCTCATTTTCTAAAAATTA223CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
IC0AAA34CG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA34CG01, mRNA sequence.
FC903062.1:228-247
CCAAACCCGCCTCTCATTTTCTAAAAATTA228CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
C34206A03EF PostHarveN Citrus clementina cDNA clone C34206A03, mRNA sequence.
FC932227.1:244-263
CCAAACCCGCCTCTCATTTTCTAAAAATTA244CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:11980061-11980080
CCAAACCCGCCTCTCATTTTCTAAAAATTA11980061CACAAGGCCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TAAAAAGATGGGGCCTTGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TAAAAAGATGGGGCCTTGTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.349 | 0.341 | search_plus_done; http://172.18.8.135:50400/match?q=TAAAAAGATGGGGCCTTGTG&k=0&no_gap=0&offset=0&limit=50
1.050 | 0.701 | search_minus_done; http://172.18.8.135:50400/match?q=CACAAGGCCCCATCTTTTTA&k=0&no_gap=0&offset=0&limit=49
1.057 | 0.007 | cgi_end;

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