GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:56:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Musa acuminata AAA Group Unigene11969_NK1 mRNA sequence.
JV435010.1:14-33
AAATAAAATTCCT14TAAAATCCTACGCTCCGTCGTATCCGCGGCCTCTTCATATCGACGCCTAC
Musa acuminata subsp. malaccensis isolate AA chromosome 7.
CP126376.1:23994369-23994388
TTCACAAGAATTAAAGAAAATAAAATTCCT23994369TAAAATCCTACGCTCCGTCGTATCCGCGGCCTCTTCATATCGACGCCTAC
Musa acuminata subsp. malaccensis isolate AA chromosome 18.
CP126387.1:23595628-23595647
TTCACAAGAATTAAAGAAAATAAAATTCCT23595628TAAAATCCTACGCTCCGTCGTATCCGCGGCCTCTTCATATCGACGCCTAC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A07.
HG996473.1:24157946-24157965
TTCACAAGAATTAAAGAAAATAAAATTCCT24157946TAAAATCCTACGCTCCGTCGTATCCGCGGCCTCTTCATATCGACGCCTAC
Musa schizocarpa genome assembly, chromosome: S07.
LS990920.1:27914706-27914725
TTCACAAGAATTAAAGAAAATAAAATTCCT27914706TAAAATCCTACGCTCCGTCGTATCCGCGGCCTCTTCATATCGACGCCTAC
Maratus michaelseni genome assembly, chromosome: 13.
OZ007600.1:147703499-147703518
GTTTGTGAAAATTTTATGACATATATTCCA147703499TAAAATCCTACGCTCCGTCGAAAACGTAACTCATTACTCAATAAACTTTT
TSA: Musa acuminata AAA Group Unigene80998_B1 mRNA sequence.
JV349054.1:131-150
GTAGGCGTCGATATGAAGAGGCCGCGGATA131CGACGGAGCGTAGGATTTTAAGGAATTTTATTTTCTTTAATTCTTGTGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAAAATCCTACGCTCCGTCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAAAATCCTACGCTCCGTCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.294 | 0.285 | search_plus_done; http://172.18.8.135:50400/match?q=TAAAATCCTACGCTCCGTCG&k=0&no_gap=0&offset=0&limit=50
0.397 | 0.103 | search_minus_done; http://172.18.8.135:50400/match?q=CGACGGAGCGTAGGATTTTA&k=0&no_gap=0&offset=0&limit=44
0.397 | 0.001 | cgi_end;

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