GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-01-10 11:23:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Prunus dulcis DNA, pseudomolecule Pd05.
AP019301.1:13140183-13140206
CCTGGCCTTAGAAATCTTCAATCAAAATGA13140183TAAATTTCAAAACACCAACAAACAGAAAGTGAGCACCAACAACATAAATATTTC
Prunus dulcis DNA, pseudomolecule Pd05.
AP019301.1:13148894-13148917
CTTGTCCTTAGACACCTTTAATTAATATAA13148894TAAATTTCAAAACACCAACAAACAGAAAGTGAGCAGCATGAACAGAAATATTTC
Prunus dulcis DNA, pseudomolecule Pd05.
AP019301.1:13161368-13161391
CTTGTCCTTAGACACCTTCAATTAATATGA13161368TAAATTTCAAAACACCAACAAACAGAAAGTGAGCATTGACAACAGAAATATTTC
Prunus dulcis DNA, unplaced-scaffold_1185.
AP021522.1:2731-2754
CCTGGCCTTAGAAATCTTCAATCAAAATGA2731TAAATTTCAAAACACCAACAAACAGAAAGTGAGCACCAACAACATAAATATTTC
Sequence 70655 from Patent EP2761003.
JC684874.1:554-577
GAAATATTTCTGTTGTCAATGCTCACTTTC554TGTTTGTTGGTGTTTTGAAATTTATCATATTAATTGAAGGTGTCTAAGGACAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAAATTTCAAAACACCAACAAACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAAATTTCAAAACACCAACAAACA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.096 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=TAAATTTCAAAACACCAACAAACA&k=0&no_gap=0&offset=0&limit=50
0.152 | 0.056 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTTGTTGGTGTTTTGAAATTTA&k=0&no_gap=0&offset=0&limit=46
0.153 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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