GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:24:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BR087626 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-043F02 5', mRNA sequence.
EX101336.1:124-143
TGGTGGGTCAGAGTTTGAGACGGGGAAGAG124TAACCTTCTTCCGGCTGAGAGTGAGCTGGAGCTGGGATTAGGGCTCAGCA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_23054.
FX707226.1:120-139
TGGTGGGTCAGAGTTTGAGACGGGGAAGAG120TAACCTTCTTCCGGCTGAGAGTGAGCTGGAGCTGGGATTAGGGCTCAGCA
BOGBH91TR BOGB Brassica oleracea genomic clone BOGBH91, genomic survey sequence.
BH604292.1:262-281
TGGTGGGTCAGAGTTTGAGACGGGGAAGAG262TAACCTTCTTCCGGCTGAGAGTGAGCTGGAGCTGGGATTAGGGCTCAGCA
BONKN35TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONKN35, genomic survey sequence.
BZ481497.1:905-924
TGGTGGGTCAGAGTTTGAGACGGGGAAGAG905TAACCTTCTTCCGGCTGAGAGTGAGCTGGAGCTGGGATTAAGGGC
Brassica napus genome assembly, chromosome: A10.
HG994364.1:1497478-1497497
TGGTGGGTCAGAGTTTGAGACGGGGAAGAG1497478TAACCTTCTTCCGGCTGAGAGTGAGCTGGAGCTGGGATTAGGGCTCAGCA
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:25241844-25241863
TGCTGAGCCCTAATCCCAGCTCCAGCTCAC25241844TCTCAGCCGGAAGAAGGTTACTCTTCCCCGTCTCAAACTCTGACCCACCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAACCTTCTTCCGGCTGAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAACCTTCTTCCGGCTGAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.189 | 0.180 | search_plus_done; http://172.18.8.135:50400/match?q=TAACCTTCTTCCGGCTGAGA&k=0&no_gap=0&offset=0&limit=50
0.221 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=TCTCAGCCGGAAGAAGGTTA&k=0&no_gap=0&offset=0&limit=45
0.221 | 0.001 | cgi_end;

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