GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:52:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Humulus lupulus var. lupulus mRNA, contig: comp278889_c0_seq1.
LA385942.1:1156-1175
TTCTCAAGAGACAATAGCTGAGGAGAATTG1156TAAGAGCTCAAAAACCCACCAAACACTTGCTCAATCTCTTTGAAACCAGC
TSA: Cannabis sativa PK02954.1_1.CasaPuKu mRNA sequence.
JP449726.1:317-336
GTTAGTTGCAAAGAGATTGAAGAAGTGTTT317GGTGGGTTTTTGAGCTCTTACAATTCTCCTCAACTTTTGTGTATTGGTAA
Humulus lupulus genome assembly, chromosome: 4.
OY720651.1:250693426-250693445
GCTGGTTTCAAAGAGATTGAGCAAGTGTTT250693426GGTGGGTTTTTGAGCTCTTACAATTCTCCTCAGTTATTATGTCTTGGAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAAGAGCTCAAAAACCCACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAAGAGCTCAAAAACCCACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.120 | 0.111 | search_plus_done; http://172.18.8.135:50400/match?q=TAAGAGCTCAAAAACCCACC&k=0&no_gap=0&offset=0&limit=50
0.144 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGGGTTTTTGAGCTCTTA&k=0&no_gap=0&offset=0&limit=49
0.146 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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