GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:17:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EG-A11_008_D11 Oil palm abnormal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600203.1:128-146
ACGCGGAGCAGGCGAGCATGTGGAGCGTCG128TAAGGAAAATGGGGTATCGGTAGCCGTAGATGCTGAGGAGGTATTTGTT
Humulus lupulus genome assembly, chromosome: 4.
OY720651.1:107003930-107003948
AGCAGGCAACATCGCTTCATATCCATATGT107003930TAAGGAAAATGGGGTATCGTCGGTTGCTATTTGATGTGTTGTTTTATAC
Cornus suecica genome assembly, chromosome: 7.
OY998244.1:49993422-49993440
ATGGGTCGGGTACCCTAGCCAGGCAACAAA49993422TAAGGAAAATGGGGTATCGGTGAAGAACCCATTGGTGTGGGAGCTTGGC
Dinocampus coccinellae genome assembly, chromosome: 6.
OY987189.1:9161760-9161778
CTTTGGAACAATTCATAATTTATATATAAA9161760TAAGGAAAATGGGGTATCGGTCATCTGTGAAGATGAAAACTTTTTCGTC
Elaeis guineensis EST, clone (6lib)_isotig30464.
LM624928.1:231-249
AACAAATACCTCCTCAGCATCTACGGCTAC231CGATACCCCATTTTCCTTACGACGCTCCACATGCTCGCCTGCTCCGCGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAAGGAAAATGGGGTATCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAAGGAAAATGGGGTATCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.124 | 0.115 | search_plus_done; http://172.18.8.135:50400/match?q=TAAGGAAAATGGGGTATCG&k=0&no_gap=0&offset=0&limit=50
0.238 | 0.114 | search_minus_done; http://172.18.8.135:50400/match?q=CGATACCCCATTTTCCTTA&k=0&no_gap=0&offset=0&limit=46
0.239 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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