GGGenome | Results

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2025-04-06 09:50:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Musa acuminata subsp. malaccensis isolate AA chromosome 1.
CP126370.1:6104456-6104475

GCAGATTTCTGTACCTCATAATGAGACAGA6104456TAAGGTCGATCGTGGAGGTCTGGACAAATTGACACTTGTGGAGGTATATA

TSA: Musa acuminata AAA Group Unigene87318_B1 mRNA sequence.
JV374041.1:195-214

GGCCAACCTCCACAAGTGTCAATTTGTCCA195GACCTCCACGATCGACCTTATCTGTCTCATTATGAGGTACAGAAATCTGG

TSA: Musa acuminata AAA Group Unigene77808_NK1 mRNA sequence.
JV391078.1:195-214

GGCCAACCTCCACAAGTGTCAATTTGTCCA195GACCTCCACGATCGACCTTATCTGTCTCATTATGAGGTACAGAAATCTGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.093 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=TAAGGTCGATCGTGGAGGTC&k=0&no_gap=0&offset=0&limit=50
0.137 | 0.044 | search_minus_done; http://172.18.8.135:50400/match?q=GACCTCCACGATCGACCTTA&k=0&no_gap=0&offset=0&limit=49
0.139 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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