GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-16 03:53:52, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

WS02814.CR_J03 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02814_J03 3, mRNA sequence.
DR478668.1:622-641
TGCCCAACATGAACCACAGTGCCCCTGATC622TAATATGCTCCGAGTAGAAGTACAATGTGGCCAAGCTTTGCGTGCATCAA
WS02815.CR_J06 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02815_J06 3, mRNA sequence.
DR478950.1:622-641
TGCCCAACATGAACCACAGTGCCCCTGATC622TAATATGCTCCGAGTAGAAGTACAATGTGGCCAAGCTTTGCGTGCATCAA
WS02838.CR_M17 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02838_M17 3', mRNA sequence.
ES872637.1:623-642
TGCCCAACATGAACCACAGTGCCCCTGATC623TAATATGCTCCGAGTAGAAGTACAATGTGGCCAAGCTTTGCGTGCATCAA
WS02814.C21_J03 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02814_J03 5, mRNA sequence.
DR484316.1:356-375
TTGATGCACGCAAAGCTTGGCCACATTGTA356CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
WS02815.C21_J06 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02815_J06 5, mRNA sequence.
DR484600.1:367-386
TTGATGCACGCAAAGCTTGGCCACATTGTA367CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
GQ03108.B7_K17 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ03108_K17 5', mRNA sequence.
EX350128.1:351-370
TTGATGCACGCAAAGCTTGGCCACATTGTA351CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
GQ03212.B7_F23 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03212_F23 5', mRNA sequence.
EX367099.1:361-380
TTGATGCACGCAAAGCTTGGCCACATTGTA361CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
GQ03222.B7_H16 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03222_H16 5', mRNA sequence.
EX371526.1:357-376
TTGATGCACGCAAAGCTTGGCCACATTGTA357CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
GQ03226.B7_C12 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03226_C12 5', mRNA sequence.
EX372858.1:341-360
TTGATGCACGCAAAGCTTGGCCACATTGTA341CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
GQ03227.B7_J14 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03227_J14 5', mRNA sequence.
EX373378.1:356-375
TTGATGCACGCAAAGCTTGGCCACATTGTA356CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
GQ03319.B7_M18 GQ033 - Terminal leader (Normalized library) Picea glauca cDNA clone GQ03319_M18 5', mRNA sequence.
EX391371.1:381-400
TTGATGCACGCAAAGCTTGGCCACATTGTA381CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
GQ03407.B7_F03 GQ034 - Needles - Mid-season Picea glauca cDNA clone GQ03407_F03 5', mRNA sequence.
EX396330.1:351-370
TTGATGCACGCAAAGCTTGGCCACATTGTA351CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
GQ03408.B7_E06 GQ034 - Needles - Mid-season Picea glauca cDNA clone GQ03408_E06 5', mRNA sequence.
EX396673.1:351-370
TTGATGCACGCAAAGCTTGGCCACATTGTA351CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
GQ03808.B7_I04 GQ038 - Stem - Active growth Picea glauca cDNA clone GQ03808_I04 5', mRNA sequence.
EX424646.1:354-373
TTGATGCACGCAAAGCTTGGCCACATTGTA354CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
GQ04004.B7_O01 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ04004_O01 5', mRNA sequence.
EX437302.1:387-406
TTGATGCACGCAAAGCTTGGCCACATTGTA387CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
WS02756.C21_O03 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02756_O03 5', mRNA sequence.
GW714830.1:387-406
TTGATGCACGCAAAGCTTGGCCACATTGTA387CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
WS02759.C21_L21 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02759_L21 5', mRNA sequence.
GW715680.1:384-403
TTGATGCACGCAAAGCTTGGCCACATTGTA384CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
TSA: Abies alba contig14694.Aaseedling mRNA sequence.
JV153337.1:335-354
TTGATGCACGCAAAGCTTGGCCTCAATGTA335CTTCTACTCGGAGCATATTAGATCAGGGTCACTGTGGTTCATGTTGGGCA
Picea sitchensis clone WS02756_O03 unknown mRNA.
BT070857.1:360-379
TTGATGCACGCAAAGCTTGGCCACATTGTA360CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA
Picea glauca clone GQ04004_O01 mRNA sequence.
BT118306.1:387-406
TTGATGCACGCAAAGCTTGGCCACATTGTA387CTTCTACTCGGAGCATATTAGATCAGGGGCACTGTGGTTCATGTTGGGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAATATGCTCCGAGTAGAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAATATGCTCCGAGTAGAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.639 | 0.630 | search_plus_done; http://172.18.8.135:50800/match?q=TAATATGCTCCGAGTAGAAG&k=0&no_gap=0&offset=0&limit=50
1.925 | 1.286 | search_minus_done; http://172.18.8.135:50800/match?q=CTTCTACTCGGAGCATATTA&k=0&no_gap=0&offset=0&limit=47
1.937 | 0.011 | cgi_end;

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