GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 22:45:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2B344TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW726881.1:90-111
GCAAAGAACTGATTGACTCTTGCACTATAA90TAATATGGGTGGCCTCTGCTCTGCATGCAGCTGTTAACTTCGGACAGTATCC
RS3G340TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD954956.1:564-585
GCAAAGAACTGATTGACTCTTGCACTATAA564TAATATGGGTGGCCTCTGCTCTGCATGCAGCTGTTAACTTCGGACAGTATCC
RS2BU85JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX899540.1:658-679
GGATACTGTCCGAAGTTAACAGCTGCATGC658AGAGCAGAGGCCACCCATATTATTATAGTGCAAGAGTCAATCAGTTCTTTGC
RS3G340JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD951096.1:643-664
GGATACTGTCCGAAGTTAACAGCTGCATGC643AGAGCAGAGGCCACCCATATTATTATAGTGCAAGAGTCAATCAGTTCTTTGC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3289.
FX658064.1:636-657
GGATACTGTCCGAAGTTAACAGCTGCATGC636AGAGCAGAGGCCACCCATATTATTATAGTGCAAGAGTCAATCAGTTCTTTGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_47592.
FX754773.1:572-593
GGATACTGTCCGAAGTTAACAGCTGCATGC572AGAGCAGAGGCCACCCATATTATTATAGTGCAAGAGTCAATCAGTTCTTTGC
Cochlearia excelsa genome assembly, chromosome: 2.
OY748328.1:7284286-7284307
GGATACTGTCCAAAGTTAACCGCTGCGTGA7284286AGAGCAGAGGCCACCCATATTATTATAGTGCAAGAGTCGATCAGTTCTTCGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAATATGGGTGGCCTCTGCTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAATATGGGTGGCCTCTGCTCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.232 | 0.224 | search_plus_done; http://172.18.8.135:50400/match?q=TAATATGGGTGGCCTCTGCTCT&k=0&no_gap=0&offset=0&limit=50
0.444 | 0.212 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGCAGAGGCCACCCATATTA&k=0&no_gap=0&offset=0&limit=48
0.447 | 0.003 | cgi_end;

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