GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:04:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Erpetoichthys calabaricus genome assembly, chromosome: 5.
LR536436.2:230451541-230451560
TGATTCCCTGTTCTCCACCACTTTACATTG230451541TAATCTGTTCCATGTGCCTGTGGTTCTTTGCATGAAGAAAAACTTTCTAA
Sardina pilchardus genome assembly, chromosome: 2.
OY974087.1:19671897-19671916
CTTGTTGCCATTTTGTTCTAACCATGTTCT19671897TAATCTGTTCCATGTGCCTGTGCGTGTGTGATGTCTGTGTGTATTTTCTT
Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-165D24.
AL159983.6:86674-86693
CATGTTTTCCTACACATCTGTGGCTTTCTG86674TAATCTGTTCCATGTGCCTGCGGTGCCTTTTCTTTCCATCTCTACTTAGA
Human DNA sequence from clone RP3-342H9 on chromosome 6.
AL136443.11:24322-24341
TCTAAGTAGAGATGGAAAGAAAAGGCACCG24322CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Homo sapiens DNA, chromosome 6, nearly complete genome.
AP023466.1:15370972-15370991
TCTAAGTAGAGATGGAAAGAAAAGGCACCG15370972CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Homo sapiens isolate CHM13 chromosome 6.
CP068272.2:15584053-15584072
TCTAAGTAGAGATGGAAAGAAAAGGCACCG15584053CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Homo sapiens isolate NA24385 chromosome 6.
CP139515.1:15692027-15692046
TCTAAGTAGAGATGGAAAGAAAAGGCACCG15692027CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Homo sapiens isolate NA24385 chromosome 6.
CP139538.1:15689392-15689411
TCTAAGTAGAGATGGAAAGAAAAGGCACCG15689392CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Vespertilio murinus genome assembly, chromosome: 11.
OZ004715.1:47825294-47825313
CTGAAGGCATGTCCCTCGCCGACATCAAAG47825294CAGGCACATGGAACAGATTAGCAAGGCGTCGGGGCCTGAGGAGCTATAAC
Eukaryotic synthetic construct chromosome 6.
CP034505.1:15652004-15652023
TCTAAGTAGAGATGGAAAGAAAAGGCACCG15652004CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Eukaryotic synthetic construct chromosome 6.
CP034505.1:184628132-184628151
TCTAAGTAGAGATGGAAAGAAAAGGCACCG184628132CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Eukaryotic synthetic construct chromosome 6.
CP034530.1:15652004-15652023
TCTAAGTAGAGATGGAAAGAAAAGGCACCG15652004CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG
Eukaryotic synthetic construct chromosome 6.
CP034530.1:184628132-184628151
TCTAAGTAGAGATGGAAAGAAAAGGCACCG184628132CAGGCACATGGAACAGATTACAGAAAGCCACAGATGTGTAGGAAAACATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAATCTGITTCCATGTGCCTIG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAATCTGITTCCATGTGCCTIG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.132 | 0.123 | search_plus_done; http://172.18.8.135:50400/match?q=TAATCTGTTCCATGTGCCTG&k=0&no_gap=0&offset=0&limit=50
0.165 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=CAGGCACATGGAACAGATTA&k=0&no_gap=0&offset=0&limit=47
0.171 | 0.006 | cgi_end;

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