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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:40:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Raphanus sativus mRNA, clone: RSCS01L15, 5' end sequence.
FY446457.1:97-116
CGTCCTCCTCTCCCGGCGACGTCGACGGCT97TAATCTTCGGCCAAATCCACCGCATCGTCTCCACTACCTTATCCGACGAC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_15840.
FX662348.1:185-204
CGTCCTCCTCTCCCGGCGACGTCGACGGCT185TAATCTTCGGCCAAATCCACCGCATCGTCTCCACTACCTTATCCGACGAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_29854.
FX792250.1:147-166
CGTCCTCCTCTCCCGGCGACGTCGACGGCT147TAATCTTCGGCCAAATCCACCGCATCGTCTCCACTACCTTATCCGACGAC
1098421119024 CHORI-243 Ovis aries genomic clone CH243-348B6, genomic survey sequence.
CZ925974.2:495-514
TCAGGGTTTAGATCAGGAATCTGTACACTA495TAATCTTCGGCCAAATCCACCTGTCCACATGTTTTTGTAAATAAAGTCTT
1098448229359 CHORI-243 Ovis aries genomic clone CH243-157I23, genomic survey sequence.
DU323405.1:543-562
TCAGGGTTTAGATCAGGAATCTGTACACTA543TAATCTTCGGCCAAATCCACCTGTCCACATGTTTTTGTAAATAAAGTCTT
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:40947525-40947544
CGTCCTCCTCTCCCGGCGACGTCGACGGCT40947525TAATCTTCGGCCAAATCCACCGCATCGTCTCCACTACCTTATCCGACGAC
Draba incana genome assembly, chromosome: 12.
OY755213.1:30475628-30475647
TTTCTTCCTCTCCCGGTGACGTCGACGGAT30475628TAATCTTCGGCCAAATCCACCGCATCGTCTCTTCAAATCTAACCGACGAT
Cheilosia soror genome assembly, chromosome: 1.
OX403634.1:40761642-40761661
ACCAACCTAAGGTTTTCCAGATAGCCCGCT40761642TAATCTTCGGCCAAATCCACCTTAGGCTAAGCGGGCATGCGTTTTCCGTC
Cheilosia soror genome assembly, chromosome: 1.
OX443561.1:37209400-37209419
ACCAACCTAAGGTTTTCCAGATAGCCCGCT37209400TAATCTTCGGCCAAATCCACCTTAGGCTAAGCGGGCATGCGTTTTCCGTC
Arabis alpina genome assembly, chromosome: 3.
LT669790.1:4417069-4417088
ATCGTCGGTGAGATTAGAAGAGACGATACG4417069GTGGATTTGGCCGAAGATTAAACCGTCGACGTCTCCGGGAGAGGAAGAAA
Freesia hybrid cultivar Red River anthocyanin-related R2R3 MYB regulator mRNA, complete cds.
MT210093.1:438-457
AAGGCCACAACCTCAAAGACCGACTTCGAC438GTGGATTTGGCCGAAGATTAATATTAATCCTCATCAAGAAACTGATCAAT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:3085425-3085444
GTCGTCGGATAAGGTAGTGGAGACGATGCG3085425GTGGATTTGGCCGAAGATTAAGCCGTCGACGTCGCCGGGAGAGGAGGACG
Cochlearia excelsa genome assembly, chromosome: 1.
OY748327.1:14027142-14027161
ATCGTCGGATAGATTAGAGGAGACGATACG14027142GTGGATTTGGCCGAAGATTAATCCGTCAACGTCGCTGGGAGAAGAGGAGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TAATCTTCGGCCAAATCCAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TAATCTTCGGCCAAATCCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.433 | 0.424 | search_plus_done; http://172.18.8.135:50400/match?q=TAATCTTCGGCCAAATCCAC&k=0&no_gap=0&offset=0&limit=50
0.555 | 0.122 | search_minus_done; http://172.18.8.135:50400/match?q=GTGGATTTGGCCGAAGATTA&k=0&no_gap=0&offset=0&limit=41
0.558 | 0.003 | cgi_end;

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