GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 19:37:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38638155-38638174
GTGATATCTAACATTGTGCAAAAATAGATA38638155TAATGAAATGAGGCAGAGCATAAAGAATCATACTTTTTCAGCAGGTAACT
Rhinatrema bivittatum genome assembly, chromosome: 18.
LR584404.1:29938603-29938622
TTCCATGGTGCCGGGCCCTTTATCCTTTTG29938603TGCTCTGCCTCATTTCATTAGATTCTTGTTTCAGAGAACCTCCTTAGTGT
Telmatherina bonti genome assembly, chromosome: 12.
OW121832.1:19090226-19090245
GAGCACTATAGGTAATTCTCGTACACTGGG19090226TGCTCTGCCTCATTTCATTAACGGTAAGCACAGTGTGCAGACTACGTTGG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2495642-2495661
TGAAAAGCCAGGCCATTGTATGATTCTTTA2495642TGCTCTGCCTCATTTCATTATATCCTTTTCTTTTTGCAATGTTAGGTATC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2462922-2462941
AGTTACCTGCTGAAAAAGTATGATTCTTTA2462922TGCTCTGCCTCATTTCATTATATCTATTTTTGCACAATGTTAGATATCAC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2508454-2508473
TGAAAAGCCAGGCCATTGTATGATTCTTTA2508454TGCTCTGCCTCATTTCATTATATCTTTTTCTTTTTGCAATGTTAGGTATC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2553905-2553924
AGTTACCTGCTGAAAAAGTATGATTCTTTA2553905TGCTCTGCCTCATTTCATTATATCTATTTTTGCACAATGTTAGATATCAC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2506593-2506612
AGAGAGAACATGAAAAAGTATGATTCTTTT2506593TGCTCTGCCTCATTTCATTATATCTATTTTTGCACTATGTTAGATATCAC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2537846-2537865
TGAAAAGCCAGGCCATTGTATGATTCTTTA2537846TGCTCTGCCTCATTTCATTATATCTTTTTCTTTTTGCAATGTTAGGTATC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2551374-2551393
AGTTACCTGCTGAAAAAGTATGATTCTTTT2551374TGCTCTGCCTCATTTCATTATATCTATTTTTGCACTATGTTAGATATCAC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2567437-2567456
AGTTACCTGCTGAAAAAGTATGATTCTTTA2567437TGCTCTGCCTCATTTCATTATATCTATTTTTGCACAATGTTAGATATCAC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2597098-2597117
TGAAAAGCCAGGCCATTGTATGATTCTTTA2597098TGCTCTGCCTCATTTCATTATATCTTTTTCTTTTTGCAATGTTAGGTATC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2612266-2612285
TGAAAAGCCAGGCCATTGTATGATTCTTTA2612266TGCTCTGCCTCATTTCATTATATCTTTTTCTTTTTGCAATGTTAGGTATC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2648671-2648690
AGTTACCTGCTGAAAAAGTATGATTCTTTT2648671TGCTCTGCCTCATTTCATTATATCTATTTTTGCACAATGTTAGATATCAC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2590425-2590444
TGAAAAGCCAGGCCATTGTATGATTCTTTA2590425TGCTCTGCCTCATTTCATTATATCTTTTTCTTTTTGCAATGTTAGGTATC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2610904-2610923
TGAAAAGCCAGGCCATTGTATGATTCTTTA2610904TGCTCTGCCTCATTTCATTATATCTTTTTCTTTTTGCAATGTTAGGTATC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2627782-2627801
TGAAAAGCCAGGCCATTGTATGATTCTTTA2627782TGCTCTGCCTCATTTCATTATATCTTTTTCTTTTTGCAATGTTAGGTATC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2641310-2641329
AGTTACCTGCTGAAAAAGTATGATTCTTTT2641310TGCTCTGCCTCATTTCATTATATCTATTTTTGCACTATGTTAGATATCAC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2668525-2668544
AGTTACCAACTGAAAAAGTATGATTCTTTA2668525TGCTCTGCCTCATTTCATTATATCAATTTTTGCACAATGTTAGATATCAC
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2710805-2710824
TGAAAAGCCAGGCCATTGTATGATTCTTTA2710805TGCTCTGCCTCATTTCATTATATCTTTTTCTTTTTGCAATGTTAGGTATC
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2724347-2724366
AGTTACCTGCTGAAAAAGTATGATTCTTTT2724347TGCTCTGCCTCATTTCATTATATCTATTTTTGCACTATGTTAGATATCAC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2750757-2750776
TGAAAAGCCAGGCCATTGTATGATTCTTTA2750757TGCTCTGCCTCATTTCATTATATCTTTTTCTTTTTGCAATGTTAGGTATC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2764298-2764317
AGTTACCTGCTGAAAAAGTATGATTCTTTT2764298TGCTCTGCCTCATTTCATTATATCTATTTTTGCACTATGTTAGATATCAC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2716785-2716804
TGAAAAGCCAGGCCATTGTATGATTCTTTA2716785TGCTCTGCCTCATTTCATTATATCTTTTTCTTTTTGCAATGTTAGGTATC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2730905-2730924
TGAAAAGCCAGGCCATTGTATGATTCTTTA2730905TGCTCTGCCTCATTTCATTATATCTTTTTCTTTTTGCAATGTTAGGTATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAATGAAATGAGGCAGAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAATGAAATGAGGCAGAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=TAATGAAATGAGGCAGAGCA&k=0&no_gap=0&offset=0&limit=50
0.130 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTCTGCCTCATTTCATTA&k=0&no_gap=0&offset=0&limit=49
0.146 | 0.015 | cgi_end;

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