GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 18:40:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Salmo trutta genome assembly, chromosome: 29.
LR584418.1:32594549-32594568
ACACTAGAGCAGTGTCCCAATATCATCTGA32594549TAATGGTGTTGTAAATCAAAAAACAGCTTTTACAATGTCTCAGCTGATAA
Salmo trutta genome assembly, chromosome: 12.
LR584441.1:10898226-10898245
GCCATCTCCTCTGGTGCCAATATTGTTTGG10898226TAATGGTGTTGTAAATCAAAAACCAGCTTTTACAATGTCTCAGCTGATAA
Coregonus sp. 'balchen' genome assembly, chromosome: 32.
LR778284.1:34708548-34708567
ACACTGGACCAGTGTCCCAATATTGTCTGG34708548TAATGGTGTTGTAAATCAAAAACCAGCTTTTACAATGTCTCAGCTGACAA
Picea glauca clone GQ0252_P22 mRNA sequence.
BT103441.1:357-376
CACGCCCACGCCCACGCCCACGCCCACGGC357TAATGGTGTTGTAAATCAAACAGATCAGTATGTAGAAGCTCAGTCAAATA
Gibbula magus genome assembly, chromosome: 5.
OW388293.1:76705819-76705838
CAGACTGATTTACAACTGGACACACTGATG76705819TAATGGTGTTGTAAATCAAATGGAATGGAAGTGTATGAATTGTGGGTATA
Pocota personata genome assembly, chromosome: 3.
OY720431.1:66948278-66948297
GTACAGTGCACTGTTTCTGTAGATTGATAC66948278TAATGGTGTTGTAAATCAAAGTCCCAGTGAATCCTCTTTGAATTAAGTGT
WS00910.B21_O19 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00910_O19 3', mRNA sequence.
CO206353.1:331-350
TATTTGACTGAGCTTCTACATACTGATCTG331TTTGATTTACAACACCATTAGCCGTGGGCGTGGGCGTGGGCGTGGGCGTG
WS00812.B21_M15 WS-X-N-A-9 Picea glauca cDNA clone WS00812_M15 3', mRNA sequence.
CO251088.1:329-348
TATTTGACTGAGCTTCTACATACTGATCTG329TTTGATTTACAACACCATTAGCCGTGGGCGTGGGCGTGGGCGTTGGCGTT
GQ0252.B7_P22 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0252_P22 3', mRNA sequence.
CO487785.2:273-292
TATTTGACTGAGCTTCTACATACTGATCTG273TTTGATTTACAACACCATTAGCCGTGGGCGTGGGCGTGGGCGTGGGCGTG
WS0328.C21_P06 WS-MC-N-A-20 Picea glauca cDNA clone WS0328_P06 3, mRNA sequence.
DR556514.1:329-348
TATTTGACTGAGCTTCTACATACTGATCTG329TTTGATTTACAACACCATTAGCCGTGGGCGTGGGCGTGGGCGTGGGCGTG
Haemonchus contortus strain NZ_Hco_NP chromosome X.
CP035800.1:33128776-33128795
AAAAACTATCGCTCGTATACGTCGGTCGAT33128776TTTGATTTACAACACCATTAGGGTAACTAATCAGGAAAATATCAGAGTTT
Haemonchus contortus, ISE/inbred ISE, WGS project CAVP01000000 data, chromosome: X.
LS997567.1:38485743-38485762
AAAAACTATCGCTCGTATACGTCGGTCGAT38485743TTTGATTTACAACACCATTAGGGTAACTAATCAGGAAAATATCAGAGTCT
Hydriomena furcata genome assembly, chromosome: 24.
OU538843.1:4529024-4529043
CCATGACCAAGTTGTAAACAGAAGTTGATG4529024TTTGATTTACAACACCATTATTTAGTGACTTACTGTGCCGCGCATGTGTG
Diachrysia chrysitis genome assembly, chromosome: 16.
OW028657.1:7903498-7903517
GGAGATTATGTCGAATTATGTCAATATATA7903498TTTGATTTACAACACCATTACAGAAGCTCCAATGCAATGTTATAAAATAA
Monopis laevigella genome assembly, chromosome: 1.
OX375840.1:15988321-15988340
ATGACTTTTTAATTAAAAAAAATATATACA15988321TTTGATTTACAACACCATTATAGAGCCTCGGAGAGCACTTTAAGCTGTCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAATGGTGTTGTAAATCAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAATGGTGTTGTAAATCAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.123 | 0.114 | search_plus_done; http://172.18.8.135:50400/match?q=TAATGGTGTTGTAAATCAAA&k=0&no_gap=0&offset=0&limit=50
0.340 | 0.217 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGATTTACAACACCATTA&k=0&no_gap=0&offset=0&limit=44
0.346 | 0.006 | cgi_end;

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