GGGenome | Results

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2025-04-09 07:03:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Allium cepa CUDHLF2_5316 mRNA sequence.
JR848134.1:807-827

GCTGGTTTGCGCATATCATAATGTACTCAT807CCAAATTCTGAGATGGCTGTATATATAGAAAAAAAAGGAATAGGAAATGTG

Allium cepa genome assembly, chromosome: 7.
LR994635.1:152924311-152924331

GCTGGTTTGCGCATATCATAATGTACTCAT152924311CCAAATTCTGAGATGGCTGTATATATAGAAAAAAAAGGAATAGGAAATGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.100 | 0.092 | search_plus_done; http://172.18.8.135:50400/match?q=TACAGCCATCTCAGAATTTGG&k=0&no_gap=0&offset=0&limit=50
0.133 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=CCAAATTCTGAGATGGCTGTA&k=0&no_gap=0&offset=0&limit=50
0.135 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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