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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 12:45:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BOMAZ95TF BO_2_3_KB Brassica oleracea genomic clone BOMAZ95, genomic survey sequence.
BH664063.1:163-182
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG163TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB051H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189382.2:40575-40594
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG40575TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica rapa DELLA protein (RGA1) gene, complete cds.
AY928549.1:827-846
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG827TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:58091435-58091454
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG58091435TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:19728488-19728507
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG19728488TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTATTTTATTTCTT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:42817390-42817409
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG42817390TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica rapa genome, scaffold: A06.
LR031569.1:52979006-52979025
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG52979006TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:56609370-56609389
TTCGAGGTGTAGATGTTGGCCCTCCTCTGG56609370TACATGATTCATCGGCTGTCGAGCCCATCAGCACCACTCTTTTATTTCTT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:36205022-36205041
AAGAAATAAAATAGTGGTGCTGATGGGCTC36205022GACAGCCGATGAATCATGTACCAGAGGAGGGCCAACATCTACACCTCGAA
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:38836472-38836491
AAGAAATAAAAGAGTGGTGCTGATGGGCTC38836472GACAGCCGATGAATCATGTACCAGAGGAGGGCCAACATCTACACCTCGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TACATGATTCATCGGCTGTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TACATGATTCATCGGCTGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.358 | 0.349 | search_plus_done; http://172.18.8.135:50400/match?q=TACATGATTCATCGGCTGTC&k=0&no_gap=0&offset=0&limit=50
0.465 | 0.107 | search_minus_done; http://172.18.8.135:50400/match?q=GACAGCCGATGAATCATGTA&k=0&no_gap=0&offset=0&limit=42
0.467 | 0.002 | cgi_end;

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