GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sus scrofa scrofa breed NS chromosome 4.
CP071555.1:80986459-80986478
TGCATCTACGAGCCCCAAACTCCCTGTCTA80986459TACCACTCTCCCTCCTCCCTCTTGGCAGCCACAAGTCGGTTCTCTATGTC
Pipistrellus pipistrellus genome assembly, chromosome: 7.
LR862363.1:50458922-50458941
CTCAAAGCTGCAGGGTCCCCAGCATGTTAA50458922TACCACTCTCCCTCCTCCCTCGGAGTTGCTAGACCAGCGATTTTCAACCA
Pipistrellus pygmaeus genome assembly, chromosome: 6.
OX465308.1:55409968-55409987
TCAAAGCTGCAGGGGTCCCCAGCGTGTTAA55409968TACCACTCTCCCTCCTCCCTCGGAGTTGCTAGACCAGCGATTTTCAACCA
Sus scrofa genome assembly, chromosome: 4.
OY997211.1:83776471-83776490
TGCATCTACGAGCCCCAAACTCCCTGTCTA83776471TACCACTCTCCCTCCTCCCTCTTGGCAGCCACAAGTCGGTTCTCTATGTC
Podarcis cretensis genome assembly, chromosome: 4.
OX638152.1:22313681-22313700
CCTGTGCTCCTTGTCAGTCCATTTGACCTG22313681TACCACTCTCCCTCCTCCCTCTTTCCTCTTCCTCCTGCTTCTAAGTAAGC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1379.
FX660466.1:801-820
TGAACCTGCTTCCTCCTCCTCCTCCTCCGT801TACCACTCTCCCTCCTCCCTCCTCCCACGAATGCATCCCCCGACGCGCCG
CH230-465C8.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-465C8, genomic survey sequence.
BZ193232.1:473-492
CCTATCTCTCCTCATAACTGATCCTGTCCC473TACCACTCTCCCTCCTCCCTCCTACTCAGGTTCCACACTTCTTCTTTCTC
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-166J20.
CU468820.2:6599-6618
TGCATCTACGAGCCCCAAACTCCCTGTCTA6599TACCACTCTCCCTCCTCCCTCTTGGCAGCCACAAGTCGGTTCTCTATGTC
Vaccinium vitis-idaea genome assembly, chromosome: 11.
OY978225.1:38534939-38534958
TAGTTTCTCTTTCCCACTTCCTGATACTGC38534939TACCACTCTCCCTCCTCCCTCTGCCTCTTCCGGCCTCCCCATTCCATGTC
Vaccinium vitis-idaea genome assembly, chromosome: 11.
OY978225.1:38556662-38556681
TAGTTTCTCTTTCCCACTTCCTGATACTGC38556662TACCACTCTCCCTCCTCCCTCTGCCTCTTCCGGCCTCCCCATTCCATGTC
Vespula germanica genome assembly, chromosome: 13.
HG996540.1:4590758-4590777
AAATCTCTTTCTCTCTCTTCTCCTCCCTTC4590758TACCACTCTCCCTCCTCCCTCTTCTCTCCCTCCCTCCCTGCTTCCCTCTC
Limnephilus marmoratus genome assembly, chromosome: 16.
OU862922.1:21379622-21379641
ACTCCGCCTCCTCCACCTTCCCTATCCCTC21379622TACCACTCTCCCTCCTCCCTCCTCCCCCCCCACTATCAATCAGACACAGA
Acomys russatus genome assembly, chromosome: 23.
LR877234.1:18399422-18399441
AGTAGGAAGAAGAGAGGAAGGAGGAGGAAG18399422AGGGAGGAGGGAGAGTGGTAAAGGATAAGGAAAAAGAAGGAAAAGATAGA
Acomys kempi genome assembly, chromosome: 12.
OU015366.1:69066784-69066803
AGTGGGAGGAAGAGAGGAAGGAGGAGGAAG69066784AGGGAGGAGGGAGAGTGGTAAAGGATAAGGAAAAAGAAGAAGAAGATAGA
Acomys percivali genome assembly, chromosome: 12.
OU015753.1:69373621-69373640
AGTGGGAGGAAGAGAGGAAGGAGGAGGAAG69373621AGGGAGGAGGGAGAGTGGTAAAGGATAAGGAAAAAGAAGAAGAAGATAGA
Sphaeramia orbicularis genome assembly, chromosome: 24.
LR597480.1:12103140-12103159
CTGGGAAGATGTGCGACACAGCAGACGGCG12103140AGGGAGGAGGGAGAGTGGTATCACCGAGGCGGCTGAACAGAGGAGATATG
Podarcis lilfordi genome assembly, chromosome: 4.
OX395129.1:83188241-83188260
GCTTACTTAGAAGCAGGAGGAAGAGAAAAG83188241AGGGAGGAGGGAGAGTGGTACAGGTCAAATGGACTGACAAGGAGCACAAG
Raphanus sativus mRNA, clone: RSCL05L05, 5' end sequence.
FY434761.1:478-497
CGGCGCGTCGGGGGATGCATTCGTGGGAGG478AGGGAGGAGGGAGAGTGGTAACGGAGGAGGAGGAGGAGGAAGCAGGTTCA
Raphanus sativus mRNA, clone: RSCS04O05, 5' end sequence.
FY447522.1:491-510
CGGCGCGTCGGGGGATGCATTCGTGGGAGG491AGGGAGGAGGGAGAGTGGTAACGGAGGAGGAGGAGGAGGAAGCAGGTTCA
Raphanus sativus mRNA, clone: RSCS05L17, 5' end sequence.
FY447817.1:487-506
CGGCGCGTCGGGGGATGCATTCGTGGGAGG487AGGGAGGAGGGAGAGTGGTAACGGAGGAGGAGGAGGAGGAAGCAGGTTCA
Raphanus sativus mRNA, clone: RSCS13H12, 5' end sequence.
FY450531.1:504-523
CGGCGCGTCGGGGGATGCATTCGTGGGAGG504AGGGAGGAGGGAGAGTGGTAACGGAGGAGGAGGAGGAGGAAGCAGGTTCA
Raphanus sativus mRNA, clone: RSCS24L05, 5' end sequence.
FY454558.1:478-497
CGGCGCGTCGGGGGATGCATTCGTGGGAGG478AGGGAGGAGGGAGAGTGGTAACGGAGGAGGAGGAGGAGGAAGCAGGTTCA
TSA: Raphanus sativus RS06903 mRNA sequence.
JT791450.1:485-504
CGGCGCGTCGGGGGATGCATTCGTGGGAGG485AGGGAGGAGGGAGAGTGGTAACGGAGGAGGAGGAGGAGGAAGCAGGTTCA
TSA: Raphanus sativus RS06904 mRNA sequence.
JT791451.1:485-504
CGGCGCGTCGGGGGATGCATTCGTGGGAGG485AGGGAGGAGGGAGAGTGGTAACGGAGGAGGAGGAGGAGGAAGCAGGTTCA
Rattus norvegicus clone CH230-68B19, WORKING DRAFT SEQUENCE, 14 unordered pieces.
AC105676.3:356206-356225
GAGAAAGAAGAAGTGTGGAACCTGAGTAGG356206AGGGAGGAGGGAGAGTGGTAGGGACAGGATCAGTTATGAGGAGAGATAGG
Rattus norvegicus clone CH230-241D12, WORKING DRAFT SEQUENCE, 10 unordered pieces.
AC126087.3:118268-118287
GAGAAAGAAGAAGTGTGGAACCTGAGTAGG118268AGGGAGGAGGGAGAGTGGTAGGGACAGGATCAGTTATGAGGAGAGATAGG
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-78H20.
CU462857.2:27226-27245
GACATAGAGAACCGACTTGTGGCTGCCAAG27226AGGGAGGAGGGAGAGTGGTATAGACAGGGAGTTTGGGGCTCGTAGATGCA
Triticum aestivum genome assembly, chromosome: 2B.
LR862554.1:702965410-702965429
CCTCATCAGACAAGGAGAGTGGAGGGAGGA702965410AGGGAGGAGGGAGAGTGGTACTAGGGGGGAGGGTGGCCACCTCGTTGAGC
Triticum aestivum genome assembly, chromosome: 2B.
LR865764.1:692189709-692189728
CCTCATCAGACAAGGAGAGTGGAGGGAGGA692189709AGGGAGGAGGGAGAGTGGTACTAGGGGGGAGGGTGGCCACCTCGTTGAGC
Triticum turgidum subsp. durum genome assembly, chromosome: 2B.
LT934114.1:680580410-680580429
CCTCATCAGACAAGGAGAGTGGAGGGAGGA680580410AGGGAGGAGGGAGAGTGGTACTAGGGGGGAGGGTGGCCACCTCGTTGAGC
Triticum aestivum genome assembly, chromosome: 2B.
OV100741.1:698968101-698968120
CCTCATCAGACAAGGAGAGTGGAGGGAGGA698968101AGGGAGGAGGGAGAGTGGTACTAGGGGGGAGGGTGGCCACCTCGTTGAGC
Triticum aestivum genome assembly, chromosome: 2B.
OW530314.1:698968101-698968120
CCTCATCAGACAAGGAGAGTGGAGGGAGGA698968101AGGGAGGAGGGAGAGTGGTACTAGGGGGGAGGGTGGCCACCTCGTTGAGC
Pinctada fucata DNA, chromosome 9, nearly complete sequence, Principal Pseudohaplotype.
AP027110.1:5927934-5927953
GGAAGACGGGAGGGAGGAGGGAGAAAGGAG5927934AGGGAGGAGGGAGAGTGGTATCCCCCTGTCCACCCCCTCCCCGTTATTCC
Pinctada fucata DNA, chromosome 9, nearly complete sequence, Principal Pseudohaplotype.
AP027110.1:6590811-6590830
GGAAGACGGGAGGGAGGAGGGAGAAAGGAG6590811AGGGAGGAGGGAGAGTGGTATCCCCCTGTCCACCCCCTCCCCGTTATTCC
Pinctada fucata DNA, chromosome 9, nearly complete sequence, Alternate Pseudohaplotype.
AP027124.1:2933582-2933601
GGAAGACGGGAGGGAGGAGGGAGAAAGGAG2933582AGGGAGGAGGGAGAGTGGTATCCCCCTGTCCACCCCCTCCCCGTTATTCC
Axinella damicornis genome assembly, chromosome: 6.
OZ007510.1:1713090-1713109
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGG1713090AGGGAGGAGGGAGAGTGGTAGATGTAAGACATATTTGCACATCCTCAGTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TACCACTCTCCCTCCTCCCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TACCACTCTCCCTCCTCCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.242 | 0.233 | search_plus_done; http://172.18.8.135:50400/match?q=TACCACTCTCCCTCCTCCCT&k=0&no_gap=0&offset=0&limit=50
0.991 | 0.750 | search_minus_done; http://172.18.8.135:50400/match?q=AGGGAGGAGGGAGAGTGGTA&k=0&no_gap=0&offset=0&limit=38
1.007 | 0.015 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).