GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:44:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gouania willdenowi genome assembly, chromosome: 18.
LR131982.1:25835672-25835691
TTCTATGTGGACTATGAAAACCACGTTCTG25835672TACCCATTGGTGTCCTCCAGACACCTAGAGCTGTGGACCAGTTACTACGC
Raja brachyura genome assembly, chromosome: 35.
OY740815.1:8832824-8832843
ATATCTCTCCTATGTCTGTCATTAGTCACT8832824TACCCATTGGTGTCCTCCAGAGAAGCTACCTGACCCGGTGAGTTTACTCC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH080L24, complete sequence.
AC155345.1:57912-57931
CTCGACTCTCGTTTGTAGCATAAAACACTG57912TACCCATTGGTGTCCTCCAGAAACAGCAACTTGTCCTACTACAATCTTGT
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:12804998-12805017
CTCGACTCTCGTTTGTAGCATAAAACACTG12804998TACCCATTGGTGTCCTCCAGAAACAGCAACTTGTCCTACTACAATCTTGT
Brassica napus genome assembly, chromosome: A05.
HG994359.1:12785430-12785449
CTCGACTCTCGTTTGTAGCATAAAACACTG12785430TACCCATTGGTGTCCTCCAGAAACAGCAACTTGTCCTACTACAATCTTGT
Brassica rapa genome, scaffold: A05.
LR031570.1:18527590-18527609
CTCGACTCTCGTTTGTAGCATAAAACACTG18527590TACCCATTGGTGTCCTCCAGAAACAGCAACTTGTCCTACTACAATCTTGT
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:12617744-12617763
CTCGACTCTCGTTTGTAGCATAAAACACTG12617744TACCCATTGGTGTCCTCCAGAAACAGCAACTTGTCCTACTACAATCTTGT
11-E023488-021-021-E03-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022E0321Q, mRNA sequence.
CX195228.1:37-56
GGGAAGGGATTGTAGGACACGTTGCTCTTT37CTGGAGGACACCAATGGGTATTTCCCGAAAATTATGGCAACTGCCACTCA
BNSCS3CT_UP_301_F04_01JUN2007_022 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV060818.1:353-372
GGGAAGGGATTGTAGGACACGTTGCTCTTT353CTGGAGGACACCAATGGGTATTTCCAGAAAATTATGGCAACTGCCACTCA
KBrH096A17R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH096A17, genomic survey sequence.
DU111886.1:194-213
ACAAGATTGTAGTAGGACAAGTTGCTGTTT194CTGGAGGACACCAATGGGTACAGTGTTTTATGCTACAAACGAGAGTCGAG
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:64215414-64215433
TTAACAGGATTGTAGGACACGTTGCTCTTT64215414CTGGAGGACACCAATGGGTATTTCCCGAAAATTATGGCAACTGCCACTCA
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:22920875-22920894
TTAACAGGATTGTAGGACACGTTGCTCTTT22920875CTGGAGGACACCAATGGGTATTTCCAGAAAATTATGGCAACTGCCACTCA
Brassica napus genome assembly, chromosome: A04.
HG994358.1:17446358-17446377
TTAACAGGATTGTAGGACACGTTGCTCTTT17446358CTGGAGGACACCAATGGGTATTTCCAGAAAATTATGGCAACTGCCACTCA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:58449974-58449993
TTAACAGGATTGTAGGACACGTTGCTCTTT58449974CTGGAGGACACCAATGGGTATTTCCCGAAAATTATGGCAACTGCCACTCA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:57947866-57947885
TTAACAGGATTGTAGGACACGTTGCTCTTT57947866CTGGAGGACACCAATGGGTATTTCCCGAAAATTATGGCAACTGCCACTCA
Brassica oleracea BolbHLH019 gene for Unknown.
LR756807.1:362-381
GGGAAGGGATTGTAGGACACGTTGCTCTTT362CTGGAGGACACCAATGGGTATTTCCCGAAAATTATGGCAACTGCCACTCA
Brassica napus BnabHLH016 gene for Unknown.
LR757072.1:287-306
GGGAAGGGATTGTAGGACACGTTGCTCTTT287CTGGAGGACACCAATGGGTATTTCCAGAAAATTATGGCAACTGCCACTCA
Brassica napus BnabHLH217 gene for Unknown.
LR757273.1:281-300
GGGAAGGGATTGTAGGACACGTTGCTCTTT281CTGGAGGACACCAATGGGTATTTCCCGAAAATTATGGCAACTGCCACTCA
Brassica oleracea BolbHLH019 gene for Unknown.
LR758030.1:362-381
GGGAAGGGATTGTAGGACACGTTGCTCTTT362CTGGAGGACACCAATGGGTATTTCCCGAAAATTATGGCAACTGCCACTCA
Brassica napus BnabHLH016 gene for Unknown.
LR758295.1:287-306
GGGAAGGGATTGTAGGACACGTTGCTCTTT287CTGGAGGACACCAATGGGTATTTCCAGAAAATTATGGCAACTGCCACTCA
Brassica napus BnabHLH217 gene for Unknown.
LR758496.1:281-300
GGGAAGGGATTGTAGGACACGTTGCTCTTT281CTGGAGGACACCAATGGGTATTTCCCGAAAATTATGGCAACTGCCACTCA
Brassica oleracea BolbHLH019 gene for Unknown.
LR758989.1:362-381
GGGAAGGGATTGTAGGACACGTTGCTCTTT362CTGGAGGACACCAATGGGTATTTCCCGAAAATTATGGCAACTGCCACTCA
Brassica napus BnabHLH016 gene for Unknown.
LR759254.1:287-306
GGGAAGGGATTGTAGGACACGTTGCTCTTT287CTGGAGGACACCAATGGGTATTTCCAGAAAATTATGGCAACTGCCACTCA
Brassica napus BnabHLH217 gene for Unknown.
LR759455.1:281-300
GGGAAGGGATTGTAGGACACGTTGCTCTTT281CTGGAGGACACCAATGGGTATTTCCCGAAAATTATGGCAACTGCCACTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TACCCATTGGTGTCCTCCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TACCCATTGGTGTCCTCCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.115 | 0.106 | search_plus_done; http://172.18.8.135:50400/match?q=TACCCATTGGTGTCCTCCAG&k=0&no_gap=0&offset=0&limit=50
0.403 | 0.288 | search_minus_done; http://172.18.8.135:50400/match?q=CTGGAGGACACCAATGGGTA&k=0&no_gap=0&offset=0&limit=43
0.415 | 0.011 | cgi_end;

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