GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:24:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS2C730TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX896503.1:230-249
GAAGACGAAACTGGGTACCCGAAGAAGTTT230TACCCTCTGAATCGCCAAACACATCCTATGTACACTCGACCCATCCCCAA
RS2DR84TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY939151.1:202-221
GAAGACGAAACTGGGTACCCAAAGAAGTTT202TACCCTCTGAATCGCCAAACACATCCTATGTACACTCGACCCATCCCCAA
Raphanus sativus mRNA, clone: RSCS15H16, 5' end sequence.
FY451250.1:219-238
GAAGACGAAACCGGGTACCCGAAGAAGTTT219TACCCTCTGAATCGCCAAACACATCCTATGTACACTCGACCCATCCCCAA
Raphanus sativus mRNA, clone: RSCS19N08, 5' end sequence.
FY452817.1:217-236
GAAGACGAAACCGGGTACCCGAAGAAGTTT217TACCCTCTGAATCGCCAAACACATCCTATGTACACTCGACCCATCCCCAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_10396.
FX661049.1:304-323
GAAGACGAAACCGGGTACCCGAAGAAGTTT304TACCCTCTGAATCGCCAAACACATCCTATGTACACTCGACCCATCCCCAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_12501.
FX791960.1:195-214
GAAGACGAAACCGGGTACCCGAAGAAGTTT195TACCCTCTGAATCGCCAAACACATCCTATGTACACTCGACCCATCCCCAA
TSA: Raphanus sativus RS15991 mRNA sequence.
JT800538.1:29-48
AGACGAAACCGGGTACCCGAAGAAGTTT29TACCCTCTGAATCGCCAAACACATCCTATGTACACTCGACCCATCCCCAA
Raphanus sativus cultivar WK10039 clone RsH006A10, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC255215.1:28936-28955
GAAGACGAAACCGGGTACCCGAAGAAGTTT28936TACCCTCTGAATCGCCAAACACATCCTATGTACACTCGACCCATCCCCAA
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:4722576-4722595
GAAGACGAAACTGGGTACCCGAAGAAGTTT4722576TACCCTCTGAATCGCCAAACACATCCTATGTACACTCGACCCATCCCCAA
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:39310374-39310393
TTGGGGATGGGTCGAGTGTACATAGGATGT39310374GTTTGGCGATTCAGAGGGTAAAACTTCTTCGGGTACCCAGTTTCGTCTTC
Idaea biselata genome assembly, chromosome: 11.
OY292405.1:10143481-10143500
AATTAAGTTAATTCCTCTCTCAGCGGGTCA10143481GTTTGGCGATTCAGAGGGTAACGCCGCGAGCTTGCTTGGGACTATGGGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TACCCTCTGAATCGCCAAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TACCCTCTGAATCGCCAAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.649 | 0.641 | search_plus_done; http://172.18.8.135:50400/match?q=TACCCTCTGAATCGCCAAAC&k=0&no_gap=0&offset=0&limit=50
0.772 | 0.123 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTGGCGATTCAGAGGGTA&k=0&no_gap=0&offset=0&limit=41
0.773 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).