GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:56:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UCRCS11_03H17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0003H17, mRNA sequence.
DN619107.1:319-338
CACCAATAAAAGCACCAACGACCAATCACA319TACCTCCACGTGTCAAACCATCACCCGTTCCCAGCCCCGGTCCCGGCCGT
IC0AAA42BG06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY276912.1:284-303
CACCAATAAAAGCACCAACGACCAATCACA284TACCTCCACGTGTCAAACCATCACCCGTTCCCAGCCCCGGTCCCGGCCGT
IC0AAA42BG06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42BG06, mRNA sequence.
FC912428.1:284-303
CACCAATAAAAGCACCAACGACCAATCACA284TACCTCCACGTGTCAAACCATCACCCGTTCCCAGCCCCGGTCCCGGCCGT
Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:18459618-18459637
ACGGCCGGGACCGGGGCTGGGAACGGGTGA18459618TGGTTTGACACGTGGAGGTATGTGATTGGTCGTTGGTGCTTTTATTGGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TACCTCCACGTGTCAAACCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TACCTCCACGTGTCAAACCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.497 | 0.489 | search_plus_done; http://172.18.8.135:50400/match?q=TACCTCCACGTGTCAAACCA&k=0&no_gap=0&offset=0&limit=50
0.575 | 0.077 | search_minus_done; http://172.18.8.135:50400/match?q=TGGTTTGACACGTGGAGGTA&k=0&no_gap=0&offset=0&limit=47
0.576 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).