GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 09:42:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

OL1914F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1914, mRNA sequence.
EH415569.1:558-577
CTGAGAAAGACTGTAGCGTAATACTCTTTG558TACTGATCATGCTCCTTCAGCCACGCATCTCCCAACTGATCTCCGATCCT
TSA: Raphanus sativus RS19069 mRNA sequence.
JT803616.1:590-609
CTAAGGAAGACGGTGGCGTAATACTCTTTG590TACTGATCATGCTCCTTCAGCCACGAGTCTCCCAGCTTATCTCCTATCCT
BONEE44TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONEE44, genomic survey sequence.
BZ468003.1:796-815
CTGAGAAAGACTGTAGCGTAATACTCTTTG796TACTGATCATGCTCCTTCAGCCACGCATCTCCCAACTGATCTCCCGATCT
Zea mays cultivar B73 chromosome 5 clone CH201-43D11, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.
AC197913.5:180465-180484
CTCTCATGCTCCTCCGTCTCCTCCTCCTAC180465TACTGATCATGCTCCTTCAGATGATCAAGACTTCGTTGCAGCCTTCACCA
Zea mays cultivar B73 chromosome 5 clone CH201-433P6, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.
AC205246.5:34213-34232
CTCTCATGCTCCTCCGTCTCCTCCTCCTAC34213TACTGATCATGCTCCTTCAGATGATCAAGACTTCGTTGCAGCCTTCACCA
Zea mays cultivar LT2357 chromosome 5.
CP116743.1:192175315-192175334
CTCTCATGCTCCTCCGTCTCCTCCTCCTAC192175315TACTGATCATGCTCCTTCAGATGATCAAGACTTCGTTGCAGCCTTCACCA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:9014785-9014804
CTAAGGAAGACGGTAGCGTAATACTCTTTG9014785TACTGATCATGCTCCTTCAGCCAGGAGTCTCCTAACTGATCTCCAATCCT
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:52328711-52328730
CTGAGAAAGACTGTAGCGTAATACTCTTTG52328711TACTGATCATGCTCCTTCAGCCACGCATCTCCCAACTGATCTCCGATCCT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:4808254-4808273
CTAAGGAAGACGGTAGCGTAATACTCCTTG4808254TACTGATCATGCTCCTTCAGCCAGGAGTCTCCTAACTGATCACCAATCCT
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:40446215-40446234
CTAAGGAAGACGGTGGCGTAATACTCTTTG40446215TACTGATCATGCTCCTTCAGCCACGAGTCTCCCAGCTTATCTCCTATCCT
Sequence 179381 from Patent WO2014036048.
JC929006.1:154-173
TGGTGAAGGCTGCAACGAAGTCTTGATCAT154CTGAAGGAGCATGATCAGTAGTAGGAGGAGGAGACGGAGGAGCATGAGAG
OL1914R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1914, mRNA sequence.
EH415571.1:491-510
AGGATCGGAGATCAGTTGGGAGATGCGTGG491CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACAGTCTTTCTCAG
BNAEN1GH_UP_049_G04_21JUL2006_020 Brassica napus BNAEN1GH Brassica napus cDNA 5', mRNA sequence.
ES989988.1:184-203
AGGATCGGAGATCAGTTGGGAGATGCGTGG184CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTTCTCAG
BNSCS2CT_UP_277_D06_04MAY2007_042 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV035960.1:37-56
AGGATCGGAGATCAGTTGGGAGATGCGTGG37CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTTCCCAG
BNSCS5CT_UP_100_A02_29MAY2007_016 Brassica napus BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EV084792.1:73-92
AGGATTGGTGATCAGTTAGGAGACTCCTGG73CTGAAGGAGCATGATCAGTACAAGGAGTATTACGCTACCGTCTTCCTTAG
BR043195 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-045B04 5', mRNA sequence.
EX058551.1:565-584
AGGATTGGAGATCAGTTAGGAGACTCCTGG565CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG
RS3GZ21TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD957696.1:49-68
AGGATTGGAGATCAGTTAGGAGATTCATGG49CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_25872.
FX670270.1:1286-1305
AGGATAGGAGATAAGCTGGGAGACTCGTGG1286CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCCACCGTCTTCCTTAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14295.
FX696922.1:1814-1833
AGGATTGGAGATCAGTTAGGAGACTCCTGG1814CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_28774.
FX699562.1:717-736
AGGATCGGAGATCAGTTGGGAGACTCCTGG717CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTTAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_43773.
FX744776.1:565-584
AGGATAGGAGATAAGCTGGGAGACTCGTGG565CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCCACCGTCTTCCTTAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_75318.
FX761079.1:276-295
AGGATCGGAGATCAGTTGGGAGACTCCTGG276CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTTAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_52531.
FX762939.1:274-293
AGGATTGGAGATCAGTTAGGAGACTCCTGG274CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG
Brassica rapa subsp. pekinensis clone KBrB112K04, complete sequence.
FP340381.1:6681-6700
AGGATTGGAGATCAGTTAGGAGACTCCTGG6681CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
AC189217.2:92214-92233
AGGATCGGAGATCAGTTGGGAGACTCCTGG92214CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTTAG
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:3066732-3066751
AGGATCGGAGATCAGTTGGGAGACTCCTGG3066732CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTTAG
Brassica napus genome assembly, chromosome: A01.
HG994355.1:3030057-3030076
AGGATCGGAGATCAGTTGGGAGACTCCTGG3030057CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTCAG
Brassica napus genome assembly, chromosome: C01.
HG994365.1:4004408-4004427
AGGATCGGAGATCAGTTGGGAGATGCGTGG4004408CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACAGTCTTTCTCAG
Brassica napus genome assembly, chromosome: C03.
HG994367.1:69383862-69383881
AGGATTGGTGATCAGTTAGGAGACTCCTGG69383862CTGAAGGAGCATGATCAGTACAAGGAGTATTACGCTACCGTCTTCCTTAG
Brassica rapa genome, scaffold: A01.
LR031571.1:2989491-2989510
AGGATCGGAGATCAGTTGGGAGACTCCTGG2989491CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTCAG
Brassica rapa genome, scaffold: A08.
LR031575.1:16425327-16425346
AGGATTGGAGATCAGTTAGGAGACTCCTGG16425327CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:69123930-69123949
AGGATTGGTGATCAGTTAGGAGACTCCTGG69123930CTGAAGGAGCATGATCAGTACAAGGAGTATTACGCTACCGTCTTCCTTAG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:3990028-3990047
AGGATCGGAGATCAGTTGGGAGATGCGTGG3990028CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACAGTCTTTCTCAG
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:3171921-3171940
AGGATAGGAGATAAGCTGGGAGACTCGTGG3171921CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCCACCGTCTTCCTTAG
Zea mays genome assembly, chromosome: 5.
LR897971.1:30244074-30244093
TGGTGAAGGCTGCAACGAAGTCTTGATCAT30244074CTGAAGGAGCATGATCAGTAGTAGGAGGAGGAGACGGAGGAGCATGAGAG
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:2990209-2990228
AGGATCGGAGATCAGTTGGGAGACTCCTGG2990209CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTCAG
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:22249786-22249805
AGGATTGGAGATCAGTTAGGAGACTCCTGG22249786CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TACTGATCATGCTCCTTCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TACTGATCATGCTCCTTCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.192 | 0.184 | search_plus_done; http://172.18.8.135:50400/match?q=TACTGATCATGCTCCTTCAG&k=0&no_gap=0&offset=0&limit=50
0.732 | 0.540 | search_minus_done; http://172.18.8.135:50400/match?q=CTGAAGGAGCATGATCAGTA&k=0&no_gap=0&offset=0&limit=40
0.750 | 0.018 | cgi_end;

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