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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 18:03:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Muscardinus avellanarius genome assembly, chromosome: 8.
OY726565.1:72485918-72485938
AAATACACATAAAGTATACTGCTGTCTACA72485918TACTTTCTCCTTCTCCTCTGTTGGATGACTAGGGCTCCATGTCCAGAAAAG
Podarcis cretensis genome assembly, chromosome: 8.
OX638156.1:67007201-67007221
CTCCACGCAGTTGGGATTTTGGCAGTACAA67007201TACTTTCTCCTTCTCCTCTGTCACGGTCCGCTCATCTGGAAGAGAAAGCGT
TSA: Nothofagus nervosa GR7D2IN01DHXEC mRNA sequence.
JT770061.1:464-484
TTTGCGTGAATTTGGAGTTTACAGCATAGC464TACTTTCTCCTTCTCCTCTGTTCATGAACAGCACTT
TSA: Camellia sinensis tea_rep_c23168 mRNA sequence.
KA301596.1:465-485
GTTGCGTGAAAGAAGAGTTTTGTGCATAAC465TACTTTCTCCTTCTCCTCTGTTCATGAACAACACTTCGTTCACCTTCCCCG
TSA: Camellia sinensis tea_s23638 mRNA sequence.
KA302032.1:464-484
GTTGCGTGAAAGAAGAGTTTTGTGCATAAC464TACTTTCTCCTTCTCCTCTGTTCATGAACAACTACTTCGTTCACCTTCCCC
TSA: Camellia sinensis tea_s25244 mRNA sequence.
KA303557.1:379-399
TGTTGCGTGAAAGAAGAGTTTGTGCATAAC379TACTTTCTCCTTCTCCTCTGTTCATGAACAACACTTCGTTCACCTTCCCGT
Triticum aestivum genome assembly, chromosome: 3B.
LR862536.1:832828205-832828225
TCAGTTAACTGAAATTATAGTGACTACTCC832828205TACTTTCTCCTTCTCCTCTGTTCTAAAACTTCAGCTATCATATCTACAGTA
Triticum aestivum genome assembly, chromosome: 3B.
LR862536.1:832983708-832983728
TCAGTTAACTGAAATTATAGTGACTACTCC832983708TACTTTCTCCTTCTCCTCTGTTCTGAAACTTCATCTATCATATCTACAGTA
PJS-166-T7 Subtractive cDNA library specific for young leaves of tea Camellia sinensis cDNA clone PJS-166, mRNA sequence.
CV699587.1:114-134
CGGGGAAGGTGAACGAAGTGTTGTTCATGA114ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
Camellia sinensis mRNA, clone: LR14G01, 5' end sequence, expressed in lateral roots.
FS944396.1:160-180
CGGGGAAGGTGAACGAAGTGTTGTTCATGA160ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
Camellia sinensis mRNA, clone: TB19D08, 5' end sequence, expressed in terminal buds.
FS955795.1:145-165
CGGGGAAGGTGAACGAAGTGTTGTTCATGA145ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
Camellia sinensis mRNA, clone: TB26A01, 5' end sequence, expressed in terminal buds.
FS956230.1:10-30
TGTTCATGA10ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCATC
Camellia sinensis mRNA, clone: YL07C09, 5' end sequence, expressed in young leaves.
FS959038.1:154-174
CGGGGAAGGTGAACGAAGTGTTGTTCATGA154ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
Camellia sinensis mRNA, clone: YL16C09, 5' end sequence, expressed in young leaves.
FS959723.1:107-127
CGGGGAAGGTGAACGAAGTGTTGTTCATGA107ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
Cs-EVI17 Differentially expressed cDNA libraries of tea plant responding to small green leafhopper feeding Camellia sinensis cDNA, mRNA sequence.
GH618822.1:114-134
CGGGGAAGGTGAACGAAGTGTTGTTCATGA114ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
SSH_H311_T3E3_70_TRA_11091 Camellia sinensis AQMI1 cDNA library Camellia sinensis cDNA 5', mRNA sequence.
HS397402.1:164-184
CGGGGAAGGTGAACGAAGTGTTGTTCATGA164ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
SSH_H311_T3E3_BG_137_TRA_11143 Camellia sinensis AQMI1 cDNA library Camellia sinensis cDNA 5', mRNA sequence.
HS397555.1:167-187
CGGGGAAGGTGAACGAAGTGTTGTTCATGA167ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
Tea203_2006-01-17_1/Tea203_D05_021_1 Camellia sinensis (tea) cultivar TRI2043 EST library Camellia sinensis cDNA, mRNA sequence.
JK475596.1:169-189
CGGGGAAGGTGAACGAAGTGTTGTTCATGA169ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
Tea231_2006-02-18_1/Tea231_F11_043_1 Camellia sinensis (tea) cultivar TRI2043 EST library Camellia sinensis cDNA, mRNA sequence.
JK477112.1:169-189
CGGGGAANGTGAACGAAGTGTTGTTCATGA169ACAGAGGAGAAGGAGAAAGTAGTTATGCACANNACTCTTCTTTCACGCANC
LJSB161F LIB-EST LJSB (Longjing 43 sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone SB161, mRNA sequence.
JZ485745.1:110-130
CGGGGAAGGTGAACGAAGTGTTGTTCATGA110ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
LJSB162F LIB-EST LJSB (Longjing 43 sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone SB162, mRNA sequence.
JZ485746.1:98-118
CGGGGAAGGTGAACGAAGTGTTGTTCATGA98ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
ZDSB36F LIB-EST ZDSB (Zhenghe Dabaicha sprouting buds) Camellia sinensis subtractive cDNA library Camellia sinensis cDNA clone ZDSB36, mRNA sequence.
JZ495160.1:109-129
CGGGGAAGGTGAACGAAGTGTTGTTCATGA109ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
TSA: Camellia sinensis tea_rep_c951 mRNA sequence.
KA280393.1:188-208
CGGGGAAGGTGAACGAAGTGTTGTTCATGA188ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
TSA: Camellia sinensis tea_rep_c2762 mRNA sequence.
KA282189.1:158-178
CGGGGAAGGTGAACGAAGTGTTGTTCATGA158ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
Camellia sinensis TCS1 mRNA for caffeine synthase, complete cds.
AB031280.1:136-156
CGGGGAAGGTGAACGAAGTGTTGTTCATGA136ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
Camellia japonica CjCS1 mRNA for theobromine synthase, complete cds.
AB297451.1:78-98
TGATGGAGGTGAAAGAAGCGTTGTTCATGA78ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACACAAA
Camellia kissii CkCS1 mRNA for theobromine synthase, complete cds.
AB362884.1:29-49
ATGGAGGTGAAAGAAGCGTTGTTCATGA29ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACACAAA
Camellia petelotii CcCS2 mRNA for theobromine synthase, complete cds.
AB362886.1:53-73
AGAGAGAGGTGAAAGAAGCGTTGTTCATGA53ACAGAGGAGAAGGAGAAAGTAGTGATGCACAAAACTCTTCTTTCACACAAA
Camellia sinensis var. sinensis caffeine synthase 1 mRNA, partial cds.
AY570929.1:112-132
CGGGGAAGGTGAACGAAGTGTTGTTCATGA112ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
Camellia sinensis caffeine synthase gene, complete cds.
EF526217.1:136-156
CGGGGAAGGTGAACGAAGTGTTGTTCATGA136ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGGTAA
Camellia sinensis caffeine synthase 1 (TCS1) gene, complete cds.
JX647690.1:581-601
CGGGGAAGGTGAACGAAGTGTTGTTCATGA581ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGGTAA
Camellia sinensis caffeine synthase 4 (TCS4) gene, complete cds.
JX647693.1:616-636
TGATGGAGGTGAAAGAAGCGTTGTTCATGA616ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACAGTAA
Camellia sinensis caffeine synthase mRNA, complete cds.
KT215397.1:44-64
TGGGGAAGGTAAACGAAGTGTTGTTCATGA44ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACACAAC
Camellia crassicolumna caffeine synthase mRNA, complete cds.
KT215398.1:47-67
CGGGGAAGGTGAACGAAGTGTTGTTCATGA47ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACACAAC
Camellia taliensis caffeine synthase mRNA, complete cds.
KT215399.1:47-67
CGGGGAAGGTGAACGAAGTGTTGTTCATGA47ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACACAAC
Triticum aestivum genome assembly, chromosome: 3B.
LR862536.1:832587085-832587105
TACTGTAGATATGATAGCTGAAGTTTCAGA832587085ACAGAGGAGAAGGAGAAAGTAGGAGTAGTCACTATAATTTCAGTTAACTGA
Camellia sinensis var. assamica caffeine synthase (CkCS) mRNA, complete cds.
MN163829.1:47-67
GGGAGAAGGTGAACGAAGTGTTGTTCATGA47ACAGAGGAGAAGGAGAAAGTAGTTATGCACAAAACTCTTCTTTCACGCAAC
Camellia gymnogyna theacrine synthase (GCS1) mRNA, complete cds.
ON411345.1:47-67
GGGGGAAGGTGAAAGAAGTGTTGTTCATGA47ACAGAGGAGAAGGAGAAAGTAGTTATGTACAAAACTCTTCTTTCACAGAAA
Linaria vulgaris genome assembly, chromosome: 1.
OX415249.1:27205202-27205222
AAATGGAAGTCACGCAAATTCTTCACATGA27205202ACAGAGGAGAAGGAGAAAGTAGCTATGCGAAAAATTCGGCTCTGCAGGTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TACTTTCTCCTTCTCCTCTGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TACTTTCTCCTTCTCCTCTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.275 | 0.267 | search_plus_done; http://172.18.8.135:50400/match?q=TACTTTCTCCTTCTCCTCTGT&k=0&no_gap=0&offset=0&limit=50
1.501 | 1.225 | search_minus_done; http://172.18.8.135:50400/match?q=ACAGAGGAGAAGGAGAAAGTA&k=0&no_gap=0&offset=0&limit=42
1.521 | 0.020 | cgi_end;

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