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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:28:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 1.
CP125973.1:139533410-139533428
AATTGATCTTGAATCGATTTAAATCCAATT139533410TAGACACGCATCACGATTTATCGGGTGCATCGGATCACTTTTCGCTGCT
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 5.
CP125977.1:294323224-294323242
TGATTTGAATTCTAATTTTGAATCCAACCC294323224TAGACACGCATCACGATTTTACTGGTGCGTACCGGTTCGCACCGGATCA
Avena sativa genome assembly, chromosome: 3D.
OU342394.1:10293828-10293846
TGATTTGAATTCTAATTTTGAATCCAATCC10293828TAGACACGCATCACGATTTTACTGGTGCATACCGGTTCGCACCGGATCA
Vibrio panuliri JCM 19500 DNA, chromosome 2, complete sequence.
AP019655.1:1219640-1219658
CAACCAACGGTAGTGCGTGGTTTTTCAAAA1219640TAGACACGCATCACGATTTCAAGCTCCTCGCCTAGCTCGTCTCGCAGTA
Vibrio cidicii strain 2423-01 chromosome 2, complete sequence.
CP035922.1:1042495-1042513
CAGCCAACCGTCGTGCGGGGTTTTTCAAAG1042495TAGACACGCATCACGATTTCCAGTTTATCGCTCAGCTCATCACGCAGTG
Vibrio navarrensis strain 2462-79 chromosome 2, complete sequence.
CP046792.1:1262871-1262889
CAGCCCACCGTCGTGCGTGGCTTTTCAAAA1262871TAGACACGCATCACGATTTCCAGTTTATCGCTCAGCTCATCACGCAGTG
Erwinia amylovora strain FB-20 chromosome, complete genome.
CP050240.1:2516532-2516550
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA2516532TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Erwinia amylovora strain FB-307 chromosome, complete genome.
CP050242.1:2516883-2516901
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA2516883TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Erwinia amylovora strain TS3238 chromosome, complete genome.
CP050244.1:2517004-2517022
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA2517004TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Erwinia amylovora strain FB-86 chromosome, complete genome.
CP050258.1:2517005-2517023
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA2517005TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Erwinia amylovora strain FB-207 chromosome, complete genome.
CP050263.1:2517005-2517023
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA2517005TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Vibrio navarrensis strain 0053-83 chromosome 2.
CP051120.1:976844-976862
CAGCCCACCGTCGTGCGTGGCTTTTCAAAA976844TAGACACGCATCACGATTTCCAGTTTATCGCTCAGCTCATCACGCAGTG
Erwinia amylovora strain Ea1189 chromosome, complete genome.
CP055227.2:2509606-2509624
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA2509606TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Hydrogenophaga sp. SL48 chromosome, complete genome.
CP063400.1:3752551-3752569
CAGCCGACCGTGGTGCGTGGCTTTTCGAAG3752551TAGACACGCATCACGATTTCCAGCGTGTCGGCGTACTGGTCGCGCAGGG
Erwinia amylovora strain 11-7 chromosome.
CP063688.1:2722792-2722810
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA2722792TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Erwinia amylovora strain 32-10 chromosome.
CP063691.1:2719110-2719128
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA2719110TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Erwinia amylovora strain 33-1 chromosome.
CP063805.1:1615096-1615114
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA1615096TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Vibrio navarrensis strain 20-VB00237 chromosome 2, complete sequence.
CP065218.1:422702-422720
CAGCCAACCGTCGTACGTGGTTTTTCAAAA422702TAGACACGCATCACGATTTCCAGTTTATCGCTCAGCTCATCACGCAGTG
Erwinia amylovora isolate CP201142 chromosome, complete genome.
CP076591.1:1216323-1216341
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA1216323TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Erwinia amylovora isolate CP20086202 chromosome, complete genome.
CP076594.1:2334183-2334201
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA2334183TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Erwinia amylovora isolate CP20130202 chromosome, complete genome.
CP076595.1:836768-836786
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA836768TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Erwinia amylovora strain CP200242 isolate missinsg chromosome, complete genome.
CP077850.1:2721898-2721916
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA2721898TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Pseudanabaena sp. Chao 1811 chromosome, complete genome.
CP101416.1:4392992-4393010
CAACCGATAGTGGTGCGAGGTTTTTCAAAA4392992TAGACACGCATCACGATTTCGAGGGCATCGCTGACCTCATCGCGGAATT
Erwinia pyrifoliae strain CP201486 chromosome, complete genome.
CP103445.1:2531981-2531999
CAGCCCACTGTCGTGCGCGGTTTCTCGAAA2531981TAGACACGCATCACGATTTCCAGTGAATCATTTAGCTCTTCCCGGAGGG
Erwinia amylovora strain Ea102 chromosome, complete genome.
CP104022.1:2513488-2513506
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA2513488TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Erwinia amylovora strain Ea915 chromosome, complete genome.
CP104025.1:2513497-2513515
CAGCCCACCGTCGTTCGCGGTTTCTCGAAA2513497TAGACACGCATCACGATTTCCAGTGAATCTTTGAGCTCTTGTCGGAGAG
Enterobacter asburiae strain 2017-45-80 chromosome, complete genome.
CP109692.1:1249969-1249987
CAGCCCACGGTGGTACGCGGTTTTTCAAAA1249969TAGACACGCATCACGATTTCCAGCTCGTCCTTCAGCTCTTCACGGAGGG
Erwinia pyrifoliae DSM 12163 complete genome, culture collection DSM:12163.
FN392235.1:2690918-2690936
CAGCCCACTGTCGTGCGCGGTTTCTCGAAA2690918TAGACACGCATCACGATTTCCAGTGAATCATTTAGCTCTTCCCGGAGGG
Erwinia pyrifoliae strain Ep1/96 complete chromosome.
FP236842.1:2690860-2690878
CAGCCCACTGTCGTGCGCGGTTTCTCGAAA2690860TAGACACGCATCACGATTTCCAGTGAATCATTTAGCTCTTCCCGGAGGG
Herminiimonas sp. AS8 genome assembly, chromosome: I.
LT671418.1:1522021-1522039
CAGCCAACCGTGGTACGTGGTTTTTCGAAA1522021TAGACACGCATCACGATTTCCAATTCGCCGGCGAAGCGTGCGCGCTCTT
Gymnoscopelus braueri genome assembly, chromosome: 3.
OY725510.1:4559309-4559327
TTTGCAGGGGGATGGAATTAATTGCTCGGA4559309AAATCGTGATGCGTGTCTAATTTCTGTGCAATTATTTAATAGGATGCCA
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 4.
CP125976.1:551874689-551874707
TGATCCGGTGCGAACCGGTACGCACCAGTA551874689AAATCGTGATGCGTGTCTAGGGTTGGATTTAAAATTAGAATTCAAATCA
Avena sativa genome assembly, chromosome: 2A.
OU342379.1:335473488-335473506
TGATCCGGTGCGAACCGGTACGCACCAGTA335473488AAATCGTGATGCGTGTCTAGGATTGGATTCAAAATTAGAATTCAAATCA
Avena sativa genome assembly, chromosome: 2.
OV702280.1:340463488-340463506
TGATCCGGTGCGAACCGGTACGCACCAGTA340463488AAATCGTGATGCGTGTCTAGGATTGGATTCAAAATTAGAATTCAAATCA
Enterobacter cloacae STN0717-73 DNA, complete genome.
AP022519.1:1426761-1426779
CCCTCCGTGAAGAGCTGAAGGACGAGCTGG1426761AAATCGTGATGCGTGTCTATTTTGAAAAACCGCGTACCACCGTGGGCTG
Enterobacter asburiae A2563 DNA, complete genome.
AP022628.1:1388832-1388850
CCCTCCGTGAAGAGCTGAAGGACGAGCTGG1388832AAATCGTGATGCGTGTCTATTTTGAAAAACCGCGTACCACCGTGGGCTG
Enterobacter asburiae Ent261 DNA, complete genome.
AP024281.1:1395979-1395997
CCCTCCGTGAAGAGCTGAAGGACGAGCTGG1395979AAATCGTGATGCGTGTCTATTTTGAAAAACCGCGTACCACCGTGGGCTG
Bradyrhizobium icense strain LMTR 13 chromosome, complete genome.
CP016428.1:4486156-4486174
CGCTCCGCGAAAAGCTCTCCGATCGCCTCG4486156AAATCGTGATGCGTGTCTATTTCGAGAAGCCGCGCACCACTGTCGGATG
Erwinia pyrifoliae strain EpK1/15 chromosome, complete genome.
CP023567.1:1292476-1292494
CCCTCCGGGAAGAGCTAAATGATTCACTGG1292476AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGCACGACAGTGGGCTG
Erwinia amylovora strain E-2 chromosome, complete genome.
CP024970.1:1289501-1289519
CTCTCCGACAAGAGCTCAAAGATTCACTGG1289501AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Vibrio navarrensis strain 08-2462 chromosome 2, complete sequence.
CP035681.1:252908-252926
CATTGCGTGATGAGCTGAGCGATAAACTGG252908AAATCGTGATGCGTGTCTATTTTGAAAAGCCCCGCACGACGGTGGGCTG
Vibrio cidicii strain 2756-81 chromosome 2, complete sequence.
CP046803.1:79577-79595
CACTGCGTGATGAGCTGAGCGATAAACTGG79577AAATCGTGATGCGTGTCTACTTTGAAAAACCACGCACGACGGTTGGCTG
Vibrio navarrensis strain 2014V-1106 chromosome 2.
CP051102.1:83457-83475
CACTGCGTGATGAGCTGAGCGATAAACTGG83457AAATCGTGATGCGTGTCTATTTTGAAAAGCCACGCACGACGGTGGGCTG
Erwinia amylovora strain TS3128 chromosome, complete genome.
CP056034.1:1255546-1255564
CTCTCCGACAAGAGCTCAAAGATTCACTGG1255546AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Polynucleobacter sp. TSB-Sco08W16 chromosome, complete genome.
CP061291.1:1592383-1592401
CAGAGCGTACCCGCTTTGCAGGTGAACTCG1592383AAATCGTGATGCGTGTCTACTTTGAGAAACCACGCACTACGGTTGGCTG
Vibrio navarrensis strain 2540-90 chromosome 2, complete sequence.
CP061844.1:649605-649623
CACTGCGTGATGAGCTGAGTGATAAACTGG649605AAATCGTGATGCGTGTCTATTTTGAAAAGCCACGCACGACGGTGGGCTG
Erwinia amylovora strain 1-2 chromosome.
CP063694.1:328508-328526
CTCTCCGACAAGAGCTCAAAGATTCACTGG328508AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia amylovora strain 7-3 chromosome.
CP063697.1:1211715-1211733
CTCTCCGACAAGAGCTCAAAGATTCACTGG1211715AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia amylovora strain Ea1/79Sm chromosome, complete genome.
CP064855.1:1256257-1256275
CTCTCCGACAAGAGCTCAAAGATTCACTGG1256257AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia amylovora strain 19-7 chromosome, complete genome.
CP066780.1:1255410-1255428
CTCTCCGACAAGAGCTCAAAGATTCACTGG1255410AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia amylovora strain 17-2187 chromosome, complete genome.
CP066794.1:1255562-1255580
CTCTCCGACAAGAGCTCAAAGATTCACTGG1255562AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia amylovora strain ATCC 15580 chromosome, complete genome.
CP066796.1:1255770-1255788
CTCTCCGACAAGAGCTCAAAGATTCACTGG1255770AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia amylovora isolate CP201324 chromosome, complete genome.
CP076589.1:1378296-1378314
CTCTCCGACAAGAGCTCAAAGATTCACTGG1378296AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia amylovora isolate CP200930 chromosome, complete genome.
CP076590.1:1030121-1030139
CTCTCCGACAAGAGCTCAAAGATTCACTGG1030121AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia amylovora isolate CP20140001 chromosome, complete genome.
CP076592.1:3111485-3111503
CTCTCCGACAAGAGCTCAAAGATTCACTGG3111485AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia amylovora isolate CP20130204 chromosome, complete genome.
CP076593.1:2869042-2869060
CTCTCCGACAAGAGCTCAAAGATTCACTGG2869042AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia amylovora isolate CP20161301 chromosome, complete genome.
CP076596.1:3098849-3098867
CTCTCCGACAAGAGCTCAAAGATTCACTGG3098849AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia pyrifoliae strain CP201179 chromosome, complete genome.
CP103450.1:582564-582582
CCCTCCGGGAAGAGCTAAATGATTCACTGG582564AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGCACGACAGTGGGCTG
Erwinia pyrifoliae strain CP20113301 chromosome, complete genome.
CP104745.1:1317378-1317396
CCCTCCGGGAAGAGCTAAATGATTCACTGG1317378AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGCACGACAGTGGGCTG
Erwinia amylovora strain 99east-3-1 chromosome, complete genome.
CP117554.1:1255779-1255797
CTCTCCGACAAGAGCTCAAAGATTCACTGG1255779AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Enterobacter asburiae strain 2022CK-00757 chromosome, complete genome.
CP117723.1:1386061-1386079
CCCTCCGTGAAGAGCTGAAGGACGAGCTGG1386061AAATCGTGATGCGTGTCTATTTTGAAAAACCGCGTACCACCGTGGGCTG
Enterobacter asburiae strain MO13m20 chromosome, complete genome.
CP129500.1:1460920-1460938
CCCTCCGTGAAGAGCTGAAGGACGAGCTGG1460920AAATCGTGATGCGTGTCTATTTTGAAAAACCGCGTACCACCGTGGGCTG
Enterobacter asburiae strain CRECL419 chromosome, complete genome.
CP133346.1:1411407-1411425
CCCTCCGTGAAGAGCTGAAGGACGAGCTGG1411407AAATCGTGATGCGTGTCTATTTTGAAAAACCGCGTACCACCGTGGGCTG
Enterobacter asburiae strain CRECL416 chromosome, complete genome.
CP133351.1:1415216-1415234
CCCTCCGTGAAGAGCTGAAGGACGAGCTGG1415216AAATCGTGATGCGTGTCTATTTTGAAAAACCGCGTACCACCGTGGGCTG
Erwinia amylovora CFBP1430 complete genome.
FN434113.1:1252737-1252755
CTCTCCGACAAGAGCTCAAAGATTCACTGG1252737AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia amylovora ATCC 49946 chromosomal sequence.
FN666575.1:1290225-1290243
CTCTCCGACAAGAGCTCAAAGATTCACTGG1290225AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Erwinia amylovora ATCC BAA-2158, whole genome shotgun sequence, contig 10.
FR719190.1:5738-5756
CTCTCCGACAAGAGCTCAAAGATTCACTGG5738AAATCGTGATGCGTGTCTATTTCGAGAAACCGCGAACGACGGTGGGCTG
Euplagia quadripunctaria genome assembly, chromosome: 11.
OY982570.1:2618500-2618518
CAATGTTGAGGCGCGACATTATGACAAAAT2618500AAATCGTGATGCGTGTCTAGCCTTAGACATGTGTGAACGTGGCCCAATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TAGACACGCATCACGATTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TAGACACGCATCACGATTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.104 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=TAGACACGCATCACGATTT&k=0&no_gap=0&offset=0&limit=50
0.156 | 0.052 | search_minus_done; http://172.18.8.135:50400/match?q=AAATCGTGATGCGTGTCTA&k=0&no_gap=0&offset=0&limit=20
0.181 | 0.025 | cgi_end;

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