GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:47:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rhinatrema bivittatum genome assembly, chromosome: 1.
LR584387.1:515311556-515311575
AGGGAATGACAGCTGAGGTGCTGCATTGTC515311556TAGACATTTTGCAGAACACGTGCAAGAGAGATTAAGGCCTTTAATAGAAG
Geotrypetes seraphini genome assembly, chromosome: 2.
LR699147.1:43905159-43905178
CATTTTCAATATTTTGTCTAAATCTGAGTT43905159TAGACATTTTGCAGAACACGTACAAAAATCCAGTACCAAACATGCCCGTT
Geotrypetes seraphini genome assembly, chromosome: 2.
LR699147.1:347677693-347677712
CATTTTCAATATGACATCTAAATCCGAGTT347677693TAGACATTTTGCAGAACACGTACAAAAATCCAGTACCAAACATGCCCATT
Geotrypetes seraphini genome assembly, chromosome: 2.
LR699147.1:411071533-411071552
AACCCAGCTCATTACAGAACAGCAAAAGTT411071533TAGACATTTTGCAGAACACGCACAAAATTCCGGTAGCGAACATGTTCATT
Geotrypetes seraphini genome assembly, chromosome: 4.
LR699149.1:171298002-171298021
GTTTAGTTTGGCCAAGTCCAAATCCAAGTT171298002TAGACATTTTGCAGAACACGCATAAAAATGAAGTATTTATTCACTTTTCT
Geotrypetes seraphini genome assembly, chromosome: 6.
LR699151.1:105666511-105666530
GGAAAGCGATAGGACGTCTAAATCTGAGTT105666511TAGACATTTTGCAGAACACGCATAAAAATCCAATATCAAACATGCCCATT
Geotrypetes seraphini genome assembly, chromosome: 14.
LR699159.1:61318966-61318985
GGCATTTTCAATATGATGTAAATCCGAGTT61318966TAGACATTTTGCAGAACACGAACAAAAAAATCCAGTAGCAAACATGACCA
Geotrypetes seraphini genome assembly, chromosome: 14.
LR699159.1:63558823-63558842
ACTTTTGATATGATGTCTAAATCTTGAGTT63558823TAGACATTTTGCAGAACACGCACAAAAATCCACTATCAACATGCCCAGTT
Penicillium coffeae isolate ANU01 chromosome 1.
CP142592.1:2970637-2970656
TGCGTCCCGGGTTGCGAAGGTTGACAGGGG2970637TAGACATTTTGCAGAACACGAGTTTTGCTGACTTCAAATACTTAGAATAT
Geotrypetes seraphini genome assembly, chromosome: 1.
LR699146.1:419190555-419190574
AAGTGGACACATTTGACACTAGATTTTGTG419190555CGTGTTCTGCAAAATGTCTAAACTCAGATTTAGATGTCATATTGAAAATG
Geotrypetes seraphini genome assembly, chromosome: 3.
LR699148.1:187014410-187014429
AATGATCATGTTTGCTGCTGGAGTTTTGTG187014410CGTGTTCTGCAAAATGTCTAAAATCAGATTCAGACATTGCATTAAAAATG
Geotrypetes seraphini genome assembly, chromosome: 3.
LR699148.1:341950324-341950343
AATAGACATGTTTGGTACTGCATTTTTGTG341950324CGTGTTCTGCAAAATGTCTAAACTTGGATTTAGATGTTATATTGAAAATA
Geotrypetes seraphini genome assembly, chromosome: 11.
LR699156.1:52426641-52426660
TGAAAATGGGCATGATACTGGATTTTTGTG52426641CGTGTTCTGCAAAATGTCTAAACTCGGTTTTAGACGTCATATCAAACATG
Geotrypetes seraphini genome assembly, chromosome: 14.
LR699159.1:63566971-63566990
AACTGGGCATGTCGATAGTGGATTTTTGTG63566971CGTGTTCTGCAAAATGTCTAAACTCAAGATTTAGACGTCATATCAAAAGT
Lobophora halterata genome assembly, chromosome: 13.
OW052014.1:4096031-4096050
CTACAAGCTCTGCTTAGTTTGGGGCTAGAT4096031CGTGTTCTGCAAAATGTCTAATATATTTATTTATTCTTATTATAAAGCTA
Isoperla grammatica genome assembly, chromosome: 5.
OX246741.1:7318385-7318404
GATTTTACATTAATTAACATGTCTTCTTTT7318385CGTGTTCTGCAAAATGTCTAGTCATTATAACCGTCAAATTTATTTTAACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAGACATTTTGCAGAACACG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAGACATTTTGCAGAACACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.116 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=TAGACATTTTGCAGAACACG&k=0&no_gap=0&offset=0&limit=50
0.151 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=CGTGTTCTGCAAAATGTCTA&k=0&no_gap=0&offset=0&limit=41
0.156 | 0.005 | cgi_end;

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