GGGenome | Results

2025-04-12 05:14:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Populus euphratica EST, clone P0000400034G04F1.
AJ777762.1:243-264

GTGATCCCAGGCTCAACGCTTCACAATCTC243TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGGAGGAGGAGGATTGGATC

PtaJXO0014A4A0402 Poplar cDNA library from young opposite xylem Populus tremula x Populus alba cDNA 5', mRNA sequence.
CF232649.1:75-96

GTGATCCCAGGCTCAACGCTTCACAATCTC75TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGGAGGAGGAGGATTGGATC

PtaJXO0014B1B0103 Poplar cDNA library from young opposite xylem Populus tremula x Populus alba cDNA 5', mRNA sequence.
CF232656.1:255-276

GTGATCCCAGGCTCAACGCTTCACAATCTC255TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGATTGGATC

PtaJXO0027E8E0810 Poplar cDNA library from young opposite xylem Populus tremula x Populus alba cDNA 5', mRNA sequence.
CF233780.1:271-292

GTGATCCCAGGCTCAACGCTTCACAATCTC271TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGATTGGATC

B9P10d03 Populus stem seasonal library Populus deltoides cDNA, mRNA sequence.
CK318539.1:89-110

GTGATCCCAGGCTCAACGCTTCACAATCTC89TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGATTGGATC

X9P01g05 Populus stem seasonal library Populus deltoides cDNA, mRNA sequence.
CK318652.1:286-307

GTGATCCCAGGCTCAACGCTTCACAATCTC286TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGATTGGATC

X9P03g11 Populus stem seasonal library Populus deltoides cDNA, mRNA sequence.
CK318829.1:267-288

GTGATCCCAGGCTCAACGCTTCACAATCTC267TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGATTGGATC

X9P09c09 Populus stem seasonal library Populus deltoides cDNA, mRNA sequence.
CK319308.1:536-557

GTGATCCCAGGCTCAACGCTTCACAATCTC536TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAAAGGA

CCPW14293.b1_I21.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CCPW14293, mRNA sequence.
GE590245.1:262-283

GCGACCCTAGACTGAACGCGAGCCAATCGC262TAGAGCTTGCATTCATCATTGCGGAGCGGCTCAGAAAGAGGAGAATGGGGGT

CCPW16251.b1_F07.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CCPW16251, mRNA sequence.
GE592352.1:245-266

GCGACCCTAGACTGAACGCGAGCCAATCGC245TAGAGCTTGCATTCATCATTGCGGAGCGGCTCAGAAAGAGGAGAATGGGGGT

HYS09898 Hybrid poplar cambium cDNA library during tension wood formation Populus simonii x Populus nigra cDNA clone 23_H09.ab1, mRNA sequence.
GH627404.1:282-303

GTGATCCCAGGCTCAACGCTTCACAATCTC282TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGCTTGGATC

JCST27 Jatropha curcas L. seed cDNA library Jatropha curcas cDNA 3' similar to Nicotiana tabacum 2-dehydro-3-deoxyphosphoheptonate aldolase,putative/3-deoxy-D-arabino-heptulosonate 7-phosphate synthas
GR209248.1:197-218

GTGACCCTAGACTCAATGCTTCACAATCTC197TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAAGAGAAGGATCAAGTC

EST0635 (SY-2011) cDNA Library of Larix gmelini under treated with Jasmonic acid Larix gmelinii cDNA, mRNA sequence.
HS982581.1:44-65

CATTACGGCCGGGCAACGCTTCACAATCTC44TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGTGGAGGCTTGGATC

TSA: Jatropha curcas Contig2848, mRNA sequence.
EZ410129.1:1479-1500

GTGACCCTAGACTCAATGCTTCACAATCTC1479TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAAGAGAAGGATCAAGTC

Populus trichocarpa clone WS01225_C03 unknown mRNA.
EF146934.1:1587-1608

GTGATCCCAGGCTCAACGCTTCACAATCTC1587TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGATTGGATC

Populus nigra genome assembly, chromosome: 5.
OX637676.1:8753725-8753746

GTGATCCCAGGCTCAACGCTTCACAATCTC8753725TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGCTTGGATC

Sequence 510 from Patent WO2010095150.
HH795498.1:202-223

GACTTGATCCTTCTCTTTCTAAGGCGCTCT202GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCATTGAGTCTAGGGTCAC

WS0194.B21_E21 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0194_E21 3', mRNA sequence.
CV231358.1:278-299

GATCCAATCCTCCTCCTTCTAAGGCGCTCT278GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC

WS01225.B21.1_C03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01225_C03 3', mRNA sequence.
CV236709.1:287-308

GATCCAATCCTCCTCCTTCTAAGGCGCTCT287GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC

WS02510.B21_N22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_N22 3', mRNA sequence.
CV240972.1:284-305

GATCCAATCCTCCTCCTTCTAAGGCGCTCT284GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC

WS0244.B21_L05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS0244_L05 3', mRNA sequence.
CV256748.1:289-310

GATCCAATCCTCCTCCTTCTAAGGCGCTCT289GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC

WS02026.B21_G12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02026_G12 3', mRNA sequence.
CV265127.1:301-322

GATCCAATCCTCCTCCTTCTAAGGCGCTCT301GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC

WS0154.B21_L15 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA clone WS0154_L15 3', mRNA sequence.
CV271445.1:269-290

GATCCAAGCCTCCTCCTTCTAAGGCGCTCT269GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC

WS0144.B21_C09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides cDNA clone WS0144_C09 3', mRNA sequence.
CV277639.1:281-302

GATCCAATCCTCCTCCTTCTAAGGCGCTCT281GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGC

Populus nigra mRNA, clone: PnFL2-101_J09, 3'end.
DB910342.1:293-314

GATCCAAGCCTCCTCCTTCTAAGGCGCTCT293GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC

WS01920.C21_P05 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01920_P05 3', mRNA sequence.
DT470466.1:306-327

GATCCAATCCTCCTCCTTCTAAGGCGCTCT306GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC

WS02530.B21_I23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_I23 3', mRNA sequence.
DT486288.1:284-305

GATCCAATCCTCCTCCTTCTAAGGCGCTCT284GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC

Jatropha curcas EST, clone rjcfea0_001260.
FM887963.1:252-273

GACTTGATCCTTCTCTTTCTAAGGCGCTCT252GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCATTGAGTCTAGGGTCAC

JcrME_RL0687 Expressed sequence tags from Jatropha curcas root cDNA library Jatropha curcas cDNA, mRNA sequence.
GO247143.1:202-223

GACTTGATCCTTCTCTTTCTAAGGCGCTCT202GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCATTGAGTCTAGGGTCAC

JCST247 Jatropha curcas L. seed cDNA library Jatropha curcas cDNA 5', mRNA sequence.
JK317480.1:238-259

GACTTGATCCTTCTCTTTCTAAGGCGCTCT238GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCATTGAGTCTAGGGTCAC

Draba incana genome assembly, chromosome: 11.
OY755212.1:7439666-7439687

GAACCGAGCCTTCGCTTTCGTAGACGCTCT7439666GCAATGATGAATGCAAGCTCTAGAGACTGAGAAGCGTTGAGCCTTGGGTCAC

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.759 | 0.750 | search_plus_done; http://172.18.8.135:50400/match?q=TAGAGCTTGCATTCATCATTGC&k=0&no_gap=0&offset=0&limit=50
1.478 | 0.719 | search_minus_done; http://172.18.8.135:50400/match?q=GCAATGATGAATGCAAGCTCTA&k=0&no_gap=0&offset=0&limit=34
1.488 | 0.010 | cgi_end;

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