GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:48:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Hordeum vulgare subsp. vulgare genome assembly, chromosome: 7H.
LR828194.1:286141343-286141362
GCAGGGTGCGGGGCTGGCATGGTGCTCACT286141343TAGCCAAAAGGAGACAAGCTTCGCTATGCGGTCCAGTTGTCCTTCCGGTT
Hordeum vulgare genome assembly, chromosome: 7H.
OX638755.1:282933672-282933691
GCAGGGTGCGGGGCTGGCATGGTGCTCACT282933672TAGCCAAAAGGAGACAAGCTTCGCTATGCGGTCCAGTTGTCCTTCCGGTT
GR__Eb0036M04.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0036M04 3', mRNA sequence.
CO106217.1:165-184
TGTTCACAAAACTTCATTCACAAGTTCTTC165AGCTTGTCTCCTTTTGGCTACATTTTAGTAAACTACCCAAAGTTTGTATG
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:49642205-49642224
TGTTCACAAAACTTCATTCACAAGTTCTTC49642205AGCTTGTCTCCTTTTGGCTACATTTTAGTAAACTACCCAAAGTTTGTATG
Capsella bursa-pastoris isolate WGS_leaf chromosome 4.
CP144186.1:19045616-19045635
AGGAGGTACTTTCGCTGGTCATAGTAGCTA19045616AGCTTGTCTCCTTTTGGCTAGGAGGTAATTTTTGAAGTGTACTTACTTCT
Capsella bursa-pastoris isolate WGS_leaf chromosome 12.
CP144194.1:20580232-20580251
AGGAGGTACTTTCGCTGGTCATAGTAGCTA20580232AGCTTGTCTCCTTTTGGCTAGGAGGTAATTTTTGAAGTGTACTTACTTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAGCCAAAAGGAGACAAGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAGCCAAAAGGAGACAAGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=TAGCCAAAAGGAGACAAGCT&k=0&no_gap=0&offset=0&limit=50
0.151 | 0.057 | search_minus_done; http://172.18.8.135:50400/match?q=AGCTTGTCTCCTTTTGGCTA&k=0&no_gap=0&offset=0&limit=48
0.154 | 0.003 | cgi_end;

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