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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 15:02:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

TSA: Musa acuminata AAA Group Unigene61375_NK1 mRNA sequence.
JV408895.1:82-101
CGACAGGATGGTGTTTCTGCACAAGCAGTT82TAGCCGGGAATTAGATGTGCCTTCTCTTTGTTTAATGAGGTTATGACACG
TSA: Musa acuminata AAA Group Unigene67956_B1 mRNA sequence.
JV316671.1:229-248
CGTGTCATAACCTCATTAAACAAAGAGAAG229GCACATCTAATTCCCGGCTAAACTGCTTGTGCAGAAACACCATCCCGTCG
Musa troglodytarum cultivar karat chromosome 4.
CP097506.1:41823892-41823911
CGTGTCATAACCTCATGAAACAAAGAGAAG41823892GCACATCTAATTCCCGGCTAAACTGCTTGTGCAGAAACACCATCCTGACG
Musa acuminata subsp. malaccensis isolate AA chromosome 4.
CP126373.1:31803366-31803385
CGTGTCATAACCTCATTAAACAAAGAGAAG31803366GCACATCTAATTCCCGGCTAAACTGCTTGTGCAGAAACACCATCCTGTCG
Musa acuminata subsp. malaccensis isolate AA chromosome 15.
CP126384.1:31817499-31817518
CGTGTCATAACCTCATTAAACAAAGAGAAG31817499GCACATCTAATTCCCGGCTAAACTGCTTGTGCAGAAACACCATCCTGTCG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A04.
HG996469.1:31117717-31117736
CGTGTCATAACCTCATTAAACAAAGAGAAG31117717GCACATCTAATTCCCGGCTAAACTGCTTGTGCAGAAACACCATCCTGTCG
Musa schizocarpa genome assembly, chromosome: S04.
LS990918.1:35173168-35173187
CGTGTCATAACCTCATTAAACAAAGAGAAG35173168GCACATCTAATTCCCGGCTAAACTGCTTGTGCAGAAACACCATCCCGTCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TAGCCGGGAATTAGATGTGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TAGCCGGGAATTAGATGTGC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.175 | 0.166 | search_plus_done; http://172.18.8.135:50400/match?q=TAGCCGGGAATTAGATGTGC&k=0&no_gap=0&offset=0&limit=50
0.284 | 0.110 | search_minus_done; http://172.18.8.135:50400/match?q=GCACATCTAATTCCCGGCTA&k=0&no_gap=0&offset=0&limit=49
0.290 | 0.006 | cgi_end;

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