GGGenome | Results

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2025-04-01 13:11:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Vigna angularis mRNA, clone: VES06I10.
HX944541.1:201-220

TCTCCACATTCCTCGCCACTTCCACAGCTG201TAGTAGCAGTGCATGGCAGCACCCAACAAGCCCTGGCCCAGAACTGGGGC

Sambucus nigra genome assembly, chromosome: 12.
OX422218.1:242434744-242434763

TATGAAAATGAACATATACATGTATGCAAG242434744TAGTAGCAGTGCATGGCAGCATATATGGCAGTGTATGTAAGTTGCAACAA

Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
AP015043.1:4220876-4220895

GCCCCAGTTCTGGGCCAGGGCTTGTTGGGT4220876GCTGCCATGCACTGCTACTACAGCTGTGGAAGTGGCGAGGAATGTGGAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.203 | 0.195 | search_plus_done; http://172.18.8.135:50400/match?q=TAGTAGCAGTGCATGGCAGC&k=0&no_gap=0&offset=0&limit=50
0.231 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=GCTGCCATGCACTGCTACTA&k=0&no_gap=0&offset=0&limit=48
0.232 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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