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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-10 17:47:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Dianthus caryophyllus mRNA, clone: CES09G02, 5' end sequence.
FY385647.1:123-142
GTGGAGCAACTCTAGTAAGGGCATTTACCC123TAGTGGAGGGTTGGTTGAGGGTAAAATGGTAAAAGTAAAATGTGTAGGGA
Dianthus caryophyllus mRNA, clone: CES15D03, 5' end sequence.
FY387846.1:160-179
GTGGAGCAACTCTAGTAAGGGCATTTACCC160TAGTGGAGGGTTGGTTGAGGGTAAAATGGTAAAAGTAAAATGTGTAGGGA
TSA: Dianthus caryophyllus mRNA, contig: CAK09.763.C1.
FX298108.1:157-176
GTGGAGCAACTCTAGTAAGGGCATTTACCC157TAGTGGAGGGTTGGTTGAGGGTAAAATGGTAAAAGTAAAATGTGTAGGGA
TSA: Dianthus caryophyllus mRNA, contig: CAK09.763.C2.
FX298109.1:243-262
GTGGAGCAACTCTAGTAAGGGCATTTACCC243TAGTGGAGGGTTGGTTGAGGGTAAAATGGTAAAAGTAAAATGTGTAGGGA
Sardina pilchardus genome assembly, chromosome: 2.
OY974087.1:39300469-39300488
CCTCTACTACCCCCATTACTACTCACCGAC39300469CCTCAACCAACCCTCCACTACCCCCATATTACCCACCCCTCTACTACCAC
Sardina pilchardus genome assembly, chromosome: 2.
OY974087.1:39300624-39300643
CTTATACCCACCCCTCTACTACCCACCGAC39300624CCTCAACCAACCCTCCACTACCCCCATATTACCCACCCCTCTACTACCAC
Mimachlamys varia genome assembly, chromosome: 18.
OX392544.1:40374084-40374103
AACATTACTTTGACCTAATATAGAATGTTG40374084CCTCAACCAACCCTCCACTACTAGCACTGGGCCCCGCTGGTTAAGGTGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TAGTGGAGGGTTGGTTGAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TAGTGGAGGGTTGGTTGAGG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.470 | 0.462 | search_plus_done; http://172.18.8.135:50400/match?q=TAGTGGAGGGTTGGTTGAGG&k=0&no_gap=0&offset=0&limit=50
0.584 | 0.114 | search_minus_done; http://172.18.8.135:50400/match?q=CCTCAACCAACCCTCCACTA&k=0&no_gap=0&offset=0&limit=46
0.586 | 0.002 | cgi_end;

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