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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 20:42:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH052_00624m, 5' end sequence.
AB450726.1:295-317
TATTACAGTAGTAGTACTCCTCCGGATCCC295GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC
Pyrus pyrifolia mRNA, clone: NLE2_06_24, 5' end sequence, expressed in leaf.
HX767187.1:295-317
TATTACAGTAGTAGTACTCCTCCGGATCCC295GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC
TSA: Pyrus x bretschneideri Unigene34713_XinShao mRNA sequence.
JR627297.1:331-353
TATTACAGTAGTAGTACTCCTCCGGATCCC331GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:11716130-11716152
TATTACGGTAGTAGTACTCCTCCGGATCCC11716130GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:11744510-11744532
TATTACAGTAGTAGTACTCCTCCGGATCCC11744510GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:11602361-11602383
TATTACAGTAGTAGTACTCCTCCGGATCCC11602361GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:12204408-12204430
TATTACAGTAGTAGTACTCCTCCGGATCCC12204408GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:11883173-11883195
TATTACAGTAGTAGTACTCCTCCGGATCCC11883173GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:11411234-11411256
TATTACAGTAGTAGTACTCCTCCGGATCCC11411234GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:11522330-11522352
TATTACAGTAGTAGTACTCCTCCGGATCCC11522330GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC
Malus domestica genome assembly, chromosome: 16.
OU696692.1:12031655-12031677
TATTACAGTAGTAGTACTCCTCCGGATCCC12031655GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC
Malus domestica genome assembly, chromosome: 16.
OU744557.1:12031283-12031305
TATTACAGTAGTAGTACTCCTCCGGATCCC12031283GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:12307961-12307983
TATTACAGTAGTAGTACTCCTCCGGATCCC12307961GGACTTGGGCAGGACTACAACTATCAATCCCAGCTTTCTCCTCCTCCTAAAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TAGTTGTAGTCCTGCCCAAGTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TAGTTGTAGTCCTGCCCAAGTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.114 | 0.105 | search_plus_done; http://172.18.8.135:50400/match?q=TAGTTGTAGTCCTGCCCAAGTCC&k=0&no_gap=0&offset=0&limit=50
0.267 | 0.153 | search_minus_done; http://172.18.8.135:50400/match?q=GGACTTGGGCAGGACTACAACTA&k=0&no_gap=0&offset=0&limit=50
0.275 | 0.009 | cgi_end;

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