GGGenome Help | Japanese

Database:

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:35:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

QGB19C20.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB19C20, mRNA sequence.
BQ852855.1:37-61
GAAGGATCCGTTTAATTCCGGTATTCTGTA37TATCAAACGTAAAGTTGGAGCTTGTTCCTATGTGGATGACCCCATAGGACGCCAG
TSA: Lactuca sativa Letassy_X1_41 mRNA sequence.
JI573875.1:4746-4770
GAAGGATCCGTTTAATTCCGGTATTCTGTA4746TATCAAACGTAAAGTTGGAGCTTGTTCCTATGTGGATGACCCCATAGGACGCCAG
TSA: Lactuca serriola Serrassy_T_P2_64881 mRNA sequence.
JO020545.1:928-952
CTGGCGTCCTATGGGGTCATCGACATAGGA928ACAAGCTCCAACTTTACGTTTGATATACAGAATACCAGAATTAAACGGATCCTTC
Lactuca saligna genome assembly, chromosome: 2.
OX465078.1:149414389-149414413
CTGGCGTCCTATGGGATCATCCACGTAGGA149414389ACAAGCTCCAACTTTACGTTTGATATACAGGATACCCGAATTAAATGGATCCTTC
Arctium minus genome assembly, chromosome: 4.
OX941083.1:140465489-140465513
CTGGCGCCCTATAGGATCATCCACATATGA140465489ACAAGCTCCAACTTTACGTTTGATATAGAGGATACCAGAATTAAATGGATCGTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TATCAAACGTAAAGTTGGAGCTTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TATCAAACGTAAAGTTGGAGCTTGT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.119 | 0.110 | search_plus_done; http://172.18.8.135:50400/match?q=TATCAAACGTAAAGTTGGAGCTTGT&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.026 | search_minus_done; http://172.18.8.135:50400/match?q=ACAAGCTCCAACTTTACGTTTGATA&k=0&no_gap=0&offset=0&limit=48
0.147 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).