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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 12:20:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. italica EST, clone AAFC_WHRI_Zennia015F02_M13orT7orSP6_ForR.
AM395034.1:15-34
AATGCCATCTGATT15TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCATTCCCGAGAAACAG
Brassica oleracea var. viridis mRNA, clone: KALE-011J02, 5' end sequence.
DK459973.1:240-259
TAGCTCTCTCTTGTACAATGCCATCTGATT240TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCACTCCTGAGAAACAG
Brassica oleracea var. viridis mRNA, clone: KALE-050C13, 5' end sequence.
DK474716.1:240-259
TAGCTCTCTCTTGTACAATGCCATCTGATT240TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCATTCCCGAGAAACAG
Brassica oleracea var. viridis mRNA, clone: KALE-057C21, 5' end sequence.
DK477401.1:241-260
TAGCTCTCTCTTGTACAATGCCATCTGATT241TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCACTCCTGAGAAACAG
Brassica oleracea var. viridis mRNA, clone: KALE-068M15, 5' end sequence.
DK481844.1:229-248
TAGCTCTCTCTTGTACAATGCCATCTGATT229TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCATTCCCGAGCAGAAA
Brassica oleracea var. viridis mRNA, clone: KALE-085I02, 5' end sequence.
DK488244.1:238-257
TAGCTCTCTCTTGTACAATGCCATCTGATT238TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCATTCCCGAGAAACAG
Brassica oleracea var. viridis mRNA, clone: KALE-085K22, 5' end sequence.
DK488312.1:20-39
CGTACAATGCCATCTGATT20TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCACTCCTGAGAAACAG
Brassica oleracea var. viridis mRNA, clone: KALE-092F24, 5' end sequence.
DK490876.1:240-259
TAGCTCTCTCTTGTACAATGCCATCTGATT240TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCACTCCTGAGAAACAG
Brassica oleracea var. viridis mRNA, clone: KALE-101J17, 5' end sequence.
DK494414.1:226-245
TAGCTCTCTCTTGTACAATGCCATCTGATT226TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCACTCCTGAGCAGAAA
Brassica oleracea var. viridis mRNA, clone: KALE-115F08, 5' end sequence.
DK499656.1:240-259
TAGCTCTCTCTTGTACAATGCCATCTGATT240TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCACTCCTGAGAAACAG
Brassica oleracea var. viridis mRNA, clone: KALE-141F18, 5' end sequence.
DK509602.1:235-254
TAGCTCTCTCTTGTACAATGCCATCTGATT235TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCATTCCCGAGAAACAG
Brassica oleracea var. viridis mRNA, clone: KALE-141O23, 5' end sequence.
DK509822.1:235-254
TAGCTCTCTCTTGTACAATGCCATCTGATT235TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCATTCCCGAGAAACAG
Brassica napus genome assembly, chromosome: C09.
HG994373.1:62493802-62493821
TAGCTCTCTCTTGTACAATGCCATCTGATT62493802TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCATTCCCGAGGTACTA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:60441821-60441840
TAGCTCTCTCTTGTACAATGCCATCTGATT60441821TATCGGAACCAAGAGGTGGAGGAGACACTCGCACCATTCCCGAGGTACTA
Orchestes rusci genome assembly, chromosome: 3.
OY293306.1:16127442-16127461
TTGTAGAAACTTTGTGCCAATCAATATATT16127442TATCGGAACCAAGAGGTGGATGGCTCGATCGATCCTTTTCGATAGCCTCA
odf91h08.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH979724.1:141-160
TAGTACCTCAGGAGTGGTGCGAGTGTCTCC141TCCACCTCTTGGTTCCGATAAATCAGATGGCATTGTACAAGAGAGAGCTA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:2985896-2985915
TAGTACCTCGGGAATGGTGCGAGTGTCTCC2985896TCCACCTCTTGGTTCCGATAAATCAGATGGCATTGTACAAGAGAGAGCTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TATCGGAACCAAGAGGTGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TATCGGAACCAAGAGGTGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.802 | 0.793 | search_plus_done; http://172.18.8.135:50400/match?q=TATCGGAACCAAGAGGTGGA&k=0&no_gap=0&offset=0&limit=50
0.902 | 0.100 | search_minus_done; http://172.18.8.135:50400/match?q=TCCACCTCTTGGTTCCGATA&k=0&no_gap=0&offset=0&limit=35
0.903 | 0.002 | cgi_end;

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